5yvy

Crystal structure of unlinked full length NS3 protein (eD4NS2BNS3) from DENV4 in closed conformation

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Genome polyprotein

Dengue virus 4

UniProt F8J1V3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Genome polyprotein × 1 (F8TEL4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F8J1V3_9FLAV
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–47; UniProt 1393–1439

Genome polyprotein

Dengue virus 4

UniProt F8TEL4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Genome polyprotein × 1 (F8J1V3) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name F8TEL4_9FLAV
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–618; UniProt 1475–2092

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5yvy
Deposition date deposition_date2017-11-27
Structure title titleCrystal structure of unlinked full length NS3 protein (eD4NS2BNS3) from DENV4 in closed conformation
Keywords keywordsSERINE PROTEASE, NON-STRUCTURAL PROTEIN 3, DEAH HELICASE, ATPASE, DENGUE VIRUS, FLAVIVIRUS, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5yvy__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5yvy__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5yvy__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)29.91 Å
Rg (electron density)29.35 Å
Total Rg29.83 Å
Atom count4687
Residues618
Excluded volume82719 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5yvy__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)