6b7h

Structure of mGluR3 with an agonist

Method: X-RAY DIFFRACTION Dmax: 95.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Metabotropic glutamate receptor 3

Homo sapiens

UniProt Q14832

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Monomer Protein × 1 其他Polymer 2 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 2–507 Not recorded 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 CWY (1S,2S,4S,5R,6S)-2-amino-4-[(3-methoxybenzene-1-carbonyl)amino]bicyclo[3.1.0]hexane-2,6-dicarboxylic acid × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 5.5;298 K;100 mM Bis-Tris, pH 5.5, 17% PEG10000, 100 mM ammonium acetate Resolution 2.82 Å R-free 0.223

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRM3_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 4–509; UniProt 2–507

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6b7h

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6b7h
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6b7h
Deposition date deposition_date2017-10-04
Structure title titleStructure of mGluR3 with an agonist
Keywords keywordsmGluR3 Glutamate, MEMBRANE PROTEIN-AGONIST complex; MEMBRANE PROTEIN/AGONIST
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.82
Radius of gyration Rg (electron density) rg_electron22.81
Forward intensity I(0) i042625900.00
Molecular weight molecular_weight50397.0 kDa
Excluded volume excluded_volume63047 ų
Envelope volume envelope_volume76070 ų
Hydration-shell volume shell_volume27383 ų
Envelope diameter envelope_diameter98.7
Shell Rg shell_rg30.08
Envelope Rg envelope_rg23.59
Shape Rg shape_rg22.76
Total Rg total_rg23.83
Total atoms total_atoms3553
Residues n_residues441
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax95.6
Rg (real space) rg_real23.79
Rg uncertainty (real space) rg_real_error0.77
I(0) (real space) i0_real4.2630e+07
I(0) uncertainty (real space) i0_real_error5.5520e+05
Rg (reciprocal space) rg_reciprocal23.80
I(0) (reciprocal space) i0_reciprocal42630000.0000
Solution quality estimate total_estimate0.7700
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.4
Skewness Skewness skewness0.411
Kurtosis Kurtosis kurtosis-0.021
Angular range angular_range— – 0.3350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha14930000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.415; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.763; Smooth: 0.997

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd6b7ha1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.93 — Periplasmic binding protein-like I
Superfamily Superfamily superfamilyc.93.1 — Periplasmic binding protein-like I
Family Family familyc.93.1.0 — automated matches
Domain ID domain_idd6b7ha2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

8. Citations (1)

9. Files and Curves (10)