7wih

Cryo-EM structure of LY2794193-bound mGlu3

Method: ELECTRON MICROSCOPY Dmax: 169.4 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Metabotropic glutamate receptor 3

Homo sapiens

UniProt Q14832

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 23–879 Chain B; UniProt 23–879 Not recorded NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 CWY (1S,2S,4S,5R,6S)-2-amino-4-[(3-methoxybenzene-1-carbonyl)amino]bicyclo[3.1.0]hexane-2,6-dicarboxylic acid × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.68 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRM3_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 31–887; UniProt 23–879 Author chain B; PDBConstruct 31–887; UniProt 23–879

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7wih

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7wih
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7wih
Deposition date deposition_date2022-01-03
Structure title titleCryo-EM structure of LY2794193-bound mGlu3
Keywords keywordsGlutamate, G protein-coupled receptor, Cryo-EM, Selective ligand, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier54.23
Radius of gyration Rg (electron density) rg_electron54.43
Forward intensity I(0) i0313963000.00
Molecular weight molecular_weight141900.0 kDa
Excluded volume excluded_volume175330 ų
Envelope volume envelope_volume286480 ų
Hydration-shell volume shell_volume48085 ų
Envelope diameter envelope_diameter178.2
Shell Rg shell_rg49.22
Envelope Rg envelope_rg54.83
Shape Rg shape_rg54.47
Total Rg total_rg54.10
Total atoms total_atoms10002
Residues n_residues1482
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax169.4
Rg (real space) rg_real54.86
Rg uncertainty (real space) rg_real_error2.09
I(0) (real space) i0_real3.1400e+08
I(0) uncertainty (real space) i0_real_error6.7530e+06
Rg (reciprocal space) rg_reciprocal53.67
I(0) (reciprocal space) i0_reciprocal313400000.0000
Solution quality estimate total_estimate0.7234
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary40.9
Skewness Skewness skewness0.469
Kurtosis Kurtosis kurtosis-0.845
Angular range angular_range— – 0.1450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha16070000.0000
Real-space data points n_real_points30
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.598; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.612; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)