|
5O4P
Crystal structure of AMPylated GRP78
Deposited 2017-05-30
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Not recorded
|
SO4 SULFATE ION × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;1.5M Lithium Sulfate, 0.1M HEPES pH7.5
|
Resolution 1.86 Å
R-free 0.212
|
|
5O4P
Crystal structure of AMPylated GRP78
Deposited 2017-05-30
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
28–549(522 aa)
|
Not recorded
|
SO4 SULFATE ION × 8
AMP ADENOSINE MONOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;1.5M Lithium Sulfate, 0.1M HEPES pH7.5
|
Resolution 1.86 Å
R-free 0.212
|
|
6EOB
Crystal structure of AMPylated GRP78 in apo form (Crystal form 1)
Deposited 2017-10-09
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Not recorded
|
PO4 PHOSPHATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;20% PEG1000, 0.1M NaKHPO4, PH6.2, 0.1M NaCl
|
Resolution 2.00 Å
R-free 0.280
|
|
6EOC
Crystal structure of AMPylated GRP78 in apo form (Crystal form 2)
Deposited 2017-10-09
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Not recorded
|
SO4 SULFATE ION × 1
FLC CITRATE ANION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.2;293 K;5% PEG1000, 0.1M Na2HPO4-Citrate, ph4.2, 0.2M LI2SO4
|
Resolution 1.67 Å
R-free 0.249
|
|
6EOE
Crystal structure of AMPylated GRP78 with nucleotide
Deposited 2017-10-09
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Not recorded
|
FLC CITRATE ANION × 1
SO4 SULFATE ION × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;5%PEG1000, 0.1M Na2HPO4-Citrate, PH4.2, 0.2M Li2SO4
|
Resolution 1.71 Å
R-free 0.246
|
|
6EOF
Crystal structure of AMPylated GRP78 in ADP state
Deposited 2017-10-09
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
SO4 SULFATE ION × 1
AMP ADENOSINE MONOPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.4;293 K;9% PEG1000, 0.1M Na2HPO4-Citrate, ph4.4, 0.2M Li2SO4
|
Resolution 1.59 Å
R-free 0.225
|
|
6H9U
Crystal structure of the BiP NBD and MANF SAP complex
Deposited 2018-08-06
|
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
28–413(386 aa)
|
Not recorded
|
MLT D-MALATE × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;1.92 M sodium malonate
|
Resolution 1.57 Å
R-free 0.204
|
|
6HAB
Crystal structure of BiP V461F (apo)
Deposited 2018-08-07
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
28–549(522 aa)
|
Mutation:V461F
|
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;293 K;8% PEG1000, 0.1M Tris-HCl pH8.5
|
Resolution 2.08 Å
R-free 0.271
|
|
6ZYH
Crystal structure of GRP78 (70kDa heat shock protein 5 / BiP) ATPase domain in complex with ADP and calcium
Deposited 2020-08-01
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
28–406(379 aa)
Chain B
28–406(379 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
CA CALCIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5;293 K;26% PEG6000, 0.2M CaCl2, 0.1MNaOAc Ph5
|
Resolution 1.88 Å
R-free 0.225
|
|
7A4U
Crystal structure of lid-truncated apo BiP in an oligomeric state
Deposited 2020-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
28–549(522 aa)
|
Mutation:T229A, V461F
|
GOL GLYCEROL × 12
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;298 K;0.1 M BIS-TRIS propane pH 7.5, 0.2 M trisodium citrate dihydrate, 20% PEG 3350
|
Resolution 1.77 Å
R-free 0.217
|
|
7A4V
Crystal structure of lid-truncated ADP-bound BiP in an oligomeric state
Deposited 2020-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
28–549(522 aa)
|
Mutation:T229A, V461F
|
ADP ADENOSINE-5'-DIPHOSPHATE × 2
GOL GLYCEROL × 4
K POTASSIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;298 K;0.2 M potassium citrate tribasic monohydrate, 20% PEG 3350
|
Resolution 1.94 Å
R-free 0.226
|
|
7B7Z
DeAMPylation complex of monomeric FICD and AMPylated BiP (state 1)
Deposited 2020-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
28–549(522 aa)
|
Mutation:T229A, V461F
|
AMP ADENOSINE MONOPHOSPHATE × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;0.1 M MES pH 6.5
10% PEG 4000
0.2 M NaCl
|
Resolution 1.70 Å
R-free 0.221
|
|
7B80
DeAMPylation complex of monomeric FICD and AMPylated BiP (state 2)
Deposited 2020-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
28–549(522 aa)
|
Mutation:T229A, V461F
|
AMP ADENOSINE MONOPHOSPHATE × 1
MG MAGNESIUM ION × 2
PO4 PHOSPHATE ION × 1
K POTASSIUM ION × 3
P33 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL × 2
PEG DI(HYDROXYETHYL)ETHER × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;298 K;0.1 M Tris pH 8.0
25% PEG 400
|
Resolution 1.87 Å
R-free 0.228
|