6izi

Crystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo-EM density map of the complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Peptide deformylase

Escherichia coli K-12

UniProt P0A6K3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Methionine aminopeptidase × 1 (P0AE18) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DEF_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain P; PDBConstruct 1–169; UniProt 1–169

Methionine aminopeptidase

Escherichia coli K-12

UniProt P0AE18

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Peptide deformylase × 1 (P0A6K3) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MAP1_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain Q; PDBConstruct 1–264; UniProt 1–264

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6izi
Deposition date deposition_date2018-12-19
Structure title titleCrystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo-EM density map of the complex
Keywords keywordsE. coli 70S ribosome, Protein biogenesis, Peptide deformylase, Methionine aminopeptidase, Polypeptide exit tunnel, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6izi__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6izi__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6izi__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)26.18 Å
Rg (electron density)26.12 Å
Total Rg26.34 Å
Atom count0
Residues0
Excluded volume59322 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6izi__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)