6t9k

SAGA Core module

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription factor SPT20

OrganismNot specified

UniProt P50875

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT20_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 1–604; UniProt 1–604

Protein SPT3

OrganismNot specified

UniProt P06844

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT3_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–337; UniProt 1–337

Transcription initiation factor TFIID subunit 5

OrganismNot specified

UniProt P38129

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF5_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–798; UniProt 1–798

Transcription initiation factor TFIID subunit 6

OrganismNot specified

UniProt P53040

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF6_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–516; UniProt 1–516

Transcription initiation factor TFIID subunit 9

OrganismNot specified

UniProt Q05027

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF9_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain F; PDBConstruct 1–157; UniProt 1–157

Transcription initiation factor TFIID subunit 10

OrganismNot specified

UniProt Q12030

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF10_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain G; PDBConstruct 1–206; UniProt 1–206

Transcriptional coactivator HFI1/ADA1

OrganismNot specified

UniProt Q12060

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name HFI1_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain H; PDBConstruct 1–488; UniProt 1–488

Transcription initiation factor TFIID subunit 12

OrganismNot specified

UniProt Q03761

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcriptional activator SPT7 × 1 (P35177) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF12_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–539; UniProt 1–539

Transcriptional activator SPT7

OrganismNot specified

UniProt P35177

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) SAGA-associated factor 73 × 1 (P53165) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SPT7_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain K; PDBConstruct 1–1332; UniProt 1–1332

SAGA-associated factor 73

OrganismNot specified

UniProt P53165

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 11 Transcription factor SPT20 × 1 (P50875) Protein SPT3 × 1 (P06844) Transcription initiation factor TFIID subunit 5 × 1 (P38129) Transcription initiation factor TFIID subunit 6 × 1 (P53040) Transcription initiation factor TFIID subunit 9 × 1 (Q05027) Transcription initiation factor TFIID subunit 10 × 1 (Q12030) Transcriptional coactivator HFI1/ADA1 × 1 (Q12060) Transcription initiation factor TFIID subunit 12 × 1 (Q03761) Transcriptional activator SPT7 × 1 (P35177) unassigned sequence × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SGF73_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain Q; PDBConstruct 1–657; UniProt 1–657

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6t9k
Deposition date deposition_date2019-10-28
Structure title titleSAGA Core module
Keywords keywordsCoactivator, Transcription, Histone acetyltransferase, Histone deubiquitinase, GENE REGULATION; GENE REGULATION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6t9k__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6t9k__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6t9k__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)45.21 Å
Rg (electron density)45.03 Å
Total Rg45.31 Å
Atom count19241
Residues2425
Excluded volume342510 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6t9k__assembly_1__model_1 undecameric (11) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (1)