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6wat

complex structure of PHF1

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

PHD finger protein 1

Homo sapiens

UniProt O43189

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 12 water × 4 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 10 water × 4 Consistent with protein count
11 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 2 water × 2 Consistent with protein count
12 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 3 water × 3 Consistent with protein count
13 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 2 water × 1 Consistent with protein count
14 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 4 Consistent with protein count
15 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 11 water × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 15 water × 4 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 11 water × 4 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 18 water × 4 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 12 water × 4 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 8 water × 4 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 15 water × 4 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 4 Histone H3.1t peptide × 2 （Q16695） UNKNOWN ATOM OR ION × 4 water × 4 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2e5p 5xfn 5xfo 5xfp 5xfp

5 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2m0o 4hcz 4hcz 5xfp 6wat 6wat 6wat 6wat 6wat 6wat 6wat 6wat

31 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name PHF1_HUMAN
Isoform O43189-2
PDB entities 1
Chains and sequence ranges Author chain AA； PDBConstruct 2–61； UniProt 28–87 Author chain AC； PDBConstruct 2–61； UniProt 28–87 Author chain BA； PDBConstruct 2–61； UniProt 28–87 Author chain BC； PDBConstruct 2–61； UniProt 28–87 Author chain CA； PDBConstruct 2–61； UniProt 28–87 Author chain CC； PDBConstruct 2–61； UniProt 28–87 Author chain DA； PDBConstruct 2–61； UniProt 28–87 Author chain DC； PDBConstruct 2–61； UniProt 28–87 Author chain EA； PDBConstruct 2–61； UniProt 28–87 Author chain EC； PDBConstruct 2–61； UniProt 28–87 Author chain FA； PDBConstruct 2–61； UniProt 28–87 Author chain FC； PDBConstruct 2–61； UniProt 28–87 Author chain GA； PDBConstruct 2–61； UniProt 28–87 Author chain GC； PDBConstruct 2–61； UniProt 28–87 Author chain HA； PDBConstruct 2–61； UniProt 28–87 Author chain HC； PDBConstruct 2–61； UniProt 28–87 Author chain IA； PDBConstruct 2–61； UniProt 28–87 Author chain IC； PDBConstruct 2–61； UniProt 28–87 Author chain JA； PDBConstruct 2–61； UniProt 28–87 Author chain JC； PDBConstruct 2–61； UniProt 28–87 Author chain KA； PDBConstruct 2–61； UniProt 28–87 Author chain KC； PDBConstruct 2–61； UniProt 28–87 Author chain LA； PDBConstruct 2–61； UniProt 28–87 Author chain LC； PDBConstruct 2–61； UniProt 28–87 Author chain MA； PDBConstruct 2–61； UniProt 28–87 Author chain MC； PDBConstruct 2–61； UniProt 28–87 Author chain NA； PDBConstruct 2–61； UniProt 28–87 Author chain NC； PDBConstruct 2–61； UniProt 28–87 Author chain OA； PDBConstruct 2–61； UniProt 28–87 Author chain OC； PDBConstruct 2–61； UniProt 28–87

Histone H3.1t peptide

OrganismNot specified

UniProt Q16695

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 12 water × 4 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 10 water × 4 Consistent with protein count
11 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 2 water × 2 Consistent with protein count
12 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 3 water × 3 Consistent with protein count
13 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 2 water × 1 Consistent with protein count
14 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 4 Consistent with protein count
15 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 11 water × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 15 water × 4 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 11 water × 4 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 18 water × 4 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 12 water × 4 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 8 water × 4 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 15 water × 4 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 4 PHD finger protein 1 × 2 （O43189） UNKNOWN ATOM OR ION × 4 water × 4 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2v1d 2ybp 2ybp 2ybs 2ybs 3a6n 3t6r 4a7j 4v2v 4v2v 4v2w 6oie

36 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name H31T_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A； PDBConstruct 1–9； UniProt 22–30 Author chain B； PDBConstruct 1–9； UniProt 22–30 Author chain C； PDBConstruct 1–9； UniProt 22–30 Author chain D； PDBConstruct 1–9； UniProt 22–30 Author chain E； PDBConstruct 1–9； UniProt 22–30 Author chain F； PDBConstruct 1–9； UniProt 22–30 Author chain G； PDBConstruct 1–9； UniProt 22–30 Author chain H； PDBConstruct 1–9； UniProt 22–30 Author chain I； PDBConstruct 1–9； UniProt 22–30 Author chain J； PDBConstruct 1–9； UniProt 22–30 Author chain K； PDBConstruct 1–9； UniProt 22–30 Author chain L； PDBConstruct 1–9； UniProt 22–30 Author chain M； PDBConstruct 1–9； UniProt 22–30 Author chain N； PDBConstruct 1–9； UniProt 22–30 Author chain O； PDBConstruct 1–9； UniProt 22–30 Author chain P； PDBConstruct 1–9； UniProt 22–30 Author chain Q； PDBConstruct 1–9； UniProt 22–30 Author chain R； PDBConstruct 1–9； UniProt 22–30 Author chain S； PDBConstruct 1–9； UniProt 22–30 Author chain T； PDBConstruct 1–9； UniProt 22–30 Author chain V； PDBConstruct 1–9； UniProt 22–30 Author chain Y； PDBConstruct 1–9； UniProt 22–30 Author chain Z； PDBConstruct 1–9； UniProt 22–30 Author chain a； PDBConstruct 1–9； UniProt 22–30 Author chain b； PDBConstruct 1–9； UniProt 22–30 Author chain c； PDBConstruct 1–9； UniProt 22–30 Author chain d； PDBConstruct 1–9； UniProt 22–30 Author chain e； PDBConstruct 1–9； UniProt 22–30 Author chain f； PDBConstruct 1–9； UniProt 22–30 Author chain g； PDBConstruct 1–9； UniProt 22–30

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6wat
Deposition date deposition_date2020-03-26
Structure title titlecomplex structure of PHF1
Keywords keywordsPHF1, Tudor, histone variant, complex, Structural Genomics, Structural Genomics Consortium, SGC, GENE REGULATION; GENE REGULATION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6wat__assembly_1__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
2 1 6wat__assembly_2__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
3 1 6wat__assembly_3__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
4 1 6wat__assembly_4__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
5 1 6wat__assembly_5__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
6 1 6wat__assembly_6__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
7 1 6wat__assembly_7__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
8 1 6wat__assembly_8__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
9 1 6wat__assembly_9__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
10 1 6wat__assembly_10__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
11 1 6wat__assembly_11__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
12 1 6wat__assembly_12__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
13 1 6wat__assembly_13__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
14 1 6wat__assembly_14__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
15 1 6wat__assembly_15__model_1 tetrameric （4） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)