6wj6

Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803

Method: ELECTRON MICROSCOPY

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Photosystem II protein D1 2

物种未注明

UniProt P16033

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBA2_SYNY3
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–360; UniProt 1–360

Photosystem II CP47 reaction center protein

物种未注明

UniProt P05429

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBB_SYNY3
Isoform
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–507; UniProt 1–507

Photosystem II CP43 reaction center protein

物种未注明

UniProt P09193

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBC_SYNY3
Isoform
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–460; UniProt 1–460

Photosystem II D2 protein

物种未注明

UniProt P09192

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBD_SYNY3
Isoform
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–352; UniProt 1–352

Cytochrome b559 subunit alpha

物种未注明

UniProt P09190

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBE_SYNY3
Isoform
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–81; UniProt 1–81

Cytochrome b559 subunit beta

物种未注明

UniProt P09191

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBF_SYNY3
Isoform
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–44; UniProt 1–44

Photosystem II reaction center protein H

物种未注明

UniProt P14835

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBH_SYNY3
Isoform
PDB实体 7
链与序列区间 作者链 H; PDB构建体 1–64; UniProt 1–64

Photosystem II reaction center protein I

物种未注明

UniProt Q54697

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBI_SYNY3
Isoform
PDB实体 8
链与序列区间 作者链 I; PDB构建体 1–38; UniProt 1–38

Photosystem II reaction center protein K

物种未注明

UniProt P15819

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBK_SYNY3
Isoform
PDB实体 9
链与序列区间 作者链 K; PDB构建体 1–45; UniProt 1–45

Photosystem II reaction center protein L

物种未注明

UniProt Q55354

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBL_SYNY3
Isoform
PDB实体 10
链与序列区间 作者链 L; PDB构建体 1–39; UniProt 1–39

Photosystem II reaction center protein M

物种未注明

UniProt P72701

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein T × 1 (P74787) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBM_SYNY3
Isoform
PDB实体 11
链与序列区间 作者链 M; PDB构建体 1–35; UniProt 1–35

Photosystem II reaction center protein T

物种未注明

UniProt P74787

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center X protein × 1 (P72575) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBT_SYNY3
Isoform
PDB实体 12
链与序列区间 作者链 T; PDB构建体 1–31; UniProt 1–31

Photosystem II reaction center X protein

物种未注明

UniProt P72575

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 13 Photosystem II protein D1 2 × 1 (P16033) Photosystem II CP47 reaction center protein × 1 (P05429) Photosystem II CP43 reaction center protein × 1 (P09193) Photosystem II D2 protein × 1 (P09192) Cytochrome b559 subunit alpha × 1 (P09190) Cytochrome b559 subunit beta × 1 (P09191) Photosystem II reaction center protein H × 1 (P14835) Photosystem II reaction center protein I × 1 (Q54697) Photosystem II reaction center protein K × 1 (P15819) Photosystem II reaction center protein L × 1 (Q55354) Photosystem II reaction center protein M × 1 (P72701) Photosystem II reaction center protein T × 1 (P74787) FE (II) ION × 1 CHLOROPHYLL A × 35 PHEOPHYTIN A × 2 BETA-CAROTENE × 9 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 7 ;2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE ; × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 3 DODECYL-BETA-D-MALTOSIDE × 2 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 CHLORIDE ION × 1 BICARBONATE ION × 1 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 PROTOPORPHYRIN IX CONTAINING FE × 1 N-FORMYLMETHIONINE × 3 water × 8 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 PSBX_SYNY3
Isoform
PDB实体 13
链与序列区间 作者链 X; PDB构建体 1–39; UniProt 1–39

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id6wj6
沉积日期 deposition_date2020-04-12
结构标题 titleCryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803
关键词 keywordsPhotosystem, oxidoreductase, water-splitting, photoactivation, PHOTOSYNTHESIS; PHOTOSYNTHESIS
实验方法 methodELECTRON MICROSCOPY

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

6wj6__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

6wj6__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

6wj6__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.05 Å
Rg(电子密度)39.09 Å
总 Rg39.64 Å
原子数18686
残基数1898
排除体积348240 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 6wj6__assembly_1__model_1 tridecameric (13) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (28)

6. 折叠分类 (SCOP + CATH) 10 domains

SCOP 2.08 (9 domains)

结构域编号 domain_idd6wj6a_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.26 — Bacterial photosystem II reaction centre, L and M subunits
超家族 Superfamily superfamilyf.26.1 — Bacterial photosystem II reaction centre, L and M subunits
家族 Family familyf.26.1.1 — Bacterial photosystem II reaction centre, L and M subunits
结构域编号 domain_idd6wj6b_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.55 — Photosystem II antenna protein-like
超家族 Superfamily superfamilyf.55.1 — Photosystem II antenna protein-like
家族 Family familyf.55.1.1 — Photosystem II antenna protein-like
结构域编号 domain_idd6wj6c_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.55 — Photosystem II antenna protein-like
超家族 Superfamily superfamilyf.55.1 — Photosystem II antenna protein-like
家族 Family familyf.55.1.1 — Photosystem II antenna protein-like
结构域编号 domain_idd6wj6d_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.26 — Bacterial photosystem II reaction centre, L and M subunits
超家族 Superfamily superfamilyf.26.1 — Bacterial photosystem II reaction centre, L and M subunits
家族 Family familyf.26.1.1 — Bacterial photosystem II reaction centre, L and M subunits
结构域编号 domain_idd6wj6e_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.38 — Cytochrome b559 subunits
家族 Family familyf.23.38.1 — Cytochrome b559 subunits
结构域编号 domain_idd6wj6f_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.38 — Cytochrome b559 subunits
家族 Family familyf.23.38.1 — Cytochrome b559 subunits
结构域编号 domain_idd6wj6h_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.33 — Photosystem II 10 kDa phosphoprotein PsbH
家族 Family familyf.23.33.1 — PsbH-like
结构域编号 domain_idd6wj6k_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.36 — Photosystem II reaction center protein K, PsbK
家族 Family familyf.23.36.1 — PsbK-like
结构域编号 domain_idd6wj6m_
类 Class classf — Membrane and cell surface proteins and peptides
折叠类型 Fold foldf.23 — Single transmembrane helix
超家族 Superfamily superfamilyf.23.35 — Photosystem II reaction center protein M, PsbM
家族 Family familyf.23.35.1 — PsbM-like

CATH v4.4 (1 domains)

结构域编号 domain_id6wj6A01
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology85 — Photosynthetic Reaction Center, subunit M; domain 1
同源超家族 H-superfamily homologous superfamily10 — Photosystem II protein D1-like

7. 引用文献 (1)