|
1F6M
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THIOREDOXIN REDUCTASE, THIOREDOXIN, AND THE NADP+ ANALOG, AADP+
Deposited 2000-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain C
1–108(108 aa)
Chain D
1–108(108 aa)
|
Mutation:C35S
Mutation:C35S
|
FAD FLAVIN-ADENINE DINUCLEOTIDE × 2
3AA 3-AMINOPYRIDINE-ADENINE DINUCLEOTIDE PHOSPHATE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;295 K;cacodylate, ammonium sulfate, PEG 3350, 3-aminopyridine adenine dinucleotide phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.95 Å
R-free 0.247
|
|
1F6M
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THIOREDOXIN REDUCTASE, THIOREDOXIN, AND THE NADP+ ANALOG, AADP+
Deposited 2000-06-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain G
1–108(108 aa)
Chain H
1–108(108 aa)
|
Mutation:C35S
Mutation:C35S
|
FAD FLAVIN-ADENINE DINUCLEOTIDE × 2
3AA 3-AMINOPYRIDINE-ADENINE DINUCLEOTIDE PHOSPHATE × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6;295 K;cacodylate, ammonium sulfate, PEG 3350, 3-aminopyridine adenine dinucleotide phosphate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.95 Å
R-free 0.247
|
|
1KEB
Crystal Structure of Double Mutant M37L,P40S E.coli Thioredoxin
Deposited 2001-11-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Mutation:M37L,P40S
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;300 K;100mM sodium acetate buffer, 10mM cupric acetate, 25% ethanol as precipitant, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.80 Å
R-free 0.222
|
|
1KEB
Crystal Structure of Double Mutant M37L,P40S E.coli Thioredoxin
Deposited 2001-11-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–108(108 aa)
|
Mutation:M37L,P40S
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 3.8;300 K;100mM sodium acetate buffer, 10mM cupric acetate, 25% ethanol as precipitant, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.80 Å
R-free 0.222
|
|
1SKR
T7 DNA Polymerase Complexed To DNA Primer/Template and ddATP
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
DAD 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;294 K;PEG 8000, ammonium sulfate, aces, ethylene glycol, DTT , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.40 Å
R-free 0.270
|
|
1SKS
Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;VAPOR DIFFUSION, HANGING DROP, pH 7.5
|
Resolution 2.30 Å
R-free 0.266
|
|
1SKW
Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;VAPOR DIFFUSION, HANGING DROP, pH 7.5
|
Resolution 2.30 Å
R-free 0.278
|
|
1SL0
Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
DAD 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 3.20 Å
R-free 0.351
|
|
1SL0
Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain D
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
DAD 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;pH 7.5, VAPOR DIFFUSION, HANGING DROP
|
Resolution 3.20 Å
R-free 0.351
|
|
1SL1
Binary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;VAPOR DIFFUSION, HANGING DROP, pH 7.5
|
Resolution 2.20 Å
R-free 0.262
|
|
1SL2
Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template and an incoming nucleotide
Deposited 2004-03-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
DAD 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;VAPOR DIFFUSION, HANGING DROP, pH 7.5
|
Resolution 2.30 Å
R-free 0.279
|
|
1SRX
THREE-DIMENSIONAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN-S2 TO 2.8 ANGSTROMS RESOLUTION
Deposited 1976-05-06
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.80 Å
|
|
1T8E
T7 DNA Polymerase Ternary Complex with dCTP at the Insertion Site.
Deposited 2004-05-12
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
SO4 SULFATE ION × 1
DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
PG4 TETRAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.54 Å
R-free 0.255
|
|
1THO
CRYSTAL STRUCTURE OF A MUTANT ESCHERICHIA COLI THIOREDOXIN WITH AN ARGININE INSERTION IN THE ACTIVE SITE
Deposited 1993-01-28
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.30 Å
|
|
1TK0
T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion site
Deposited 2004-06-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
SO4 SULFATE ION × 2
DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE × 1
1PE PENTAETHYLENE GLYCOL × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;294 K;PEG8000, Amonium Sulfate, PEG400, Ethylene Glycol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 21K
|
Resolution 2.30 Å
R-free 0.263
|
|
1TK5
T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strand
Deposited 2004-06-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
SO4 SULFATE ION × 2
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;PEG 8000, Ammonium Sulfate. PEG400, Etylen Glyco, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 100K
|
Resolution 2.20 Å
R-free 0.246
|
|
1TK8
T7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation site
Deposited 2004-06-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 4
SO4 SULFATE ION × 2
D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;294 K;PEG 8000, Ammonium Sulfate, PEG400, Ethylene Glycol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.50 Å
R-free 0.261
|
|
1TKD
T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site
Deposited 2004-06-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
SO4 SULFATE ION × 3
D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE × 1
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1
1PE PENTAETHYLENE GLYCOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;294 K;PEG8000, Ammonium Sulfate, PEG400, Ethylene Glycol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
|
Resolution 2.49 Å
R-free 0.265
|
|
1TXX
ACTIVE-SITE VARIANT OF E.COLI THIOREDOXIN
Deposited 1999-04-07
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:P33V, G34W
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.2;DROPS (6 ML) OF 0.050 M SODIUM SUCCINATE BUFFER, PH 4.2, CONTAINING CVWC
THIOREDOXIN (10 MG/ML), METHYL-ETHER PEG2000 (10% W/V) AND CUPRIC ACETATE (1
MM) WERE SUSPENDED OVER 1.0 ML WELLS OF 0.10 M SODIUM SUCCINATE BUFFER, PH 4.2,
CONTAINING METHYL-ETHER PEG 2000 (20% W/V) AND CUPRIC ACETATE (2 MM)., VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.20 Å
|
|
1X9M
T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA
Deposited 2004-08-23
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;PEG 8000, ammonium sulfate, magnesium chloride, pH 7.5, VAPOR DIFFUSION, temperature 295K
|
Resolution 2.10 Å
R-free 0.236
|
|
1X9S
T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-CTP as the incoming nucleotide.
Deposited 2004-08-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;PEG 8000, ammonium sulfate, magnesium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.70 Å
R-free 0.279
|
|
1X9W
T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.
Deposited 2004-08-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;295 K;PEG 8000, ammonium sulfate, magnesium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.30 Å
R-free 0.258
|
|
1XOA
THIOREDOXIN (OXIDIZED DISULFIDE FORM), NMR, 20 STRUCTURES
Deposited 1995-11-28
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
1XOB
THIOREDOXIN (REDUCED DITHIO FORM), NMR, 20 STRUCTURES
Deposited 1995-11-28
|
Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
No recorded non-water small molecule
|
SOLUTION NMR
mmCIF provides none of the parsed conditions
|
Resolution not provided
|
|
1ZCP
Crystal Structure of a catalytic site mutant E. coli TrxA (CACA)
Deposited 2005-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–108(108 aa)
Chain B
1–108(108 aa)
|
Mutation:G33A, P34C, C35A
Mutation:G33A, P34C, C35A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;277 K;30% PEG4000, 0.1 M Tris, 0.2 M Magnesium chloride, 4% acetonitrile, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.30 Å
R-free 0.281
|
|
1ZCP
Crystal Structure of a catalytic site mutant E. coli TrxA (CACA)
Deposited 2005-04-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
1–108(108 aa)
Chain D
1–108(108 aa)
|
Mutation:G33A, P34C, C35A
Mutation:G33A, P34C, C35A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.5;277 K;30% PEG4000, 0.1 M Tris, 0.2 M Magnesium chloride, 4% acetonitrile, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.30 Å
R-free 0.281
|
|
1ZYQ
T7 DNA polymerase in complex with 8oG and incoming ddATP
Deposited 2005-06-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Not recorded
|
MG MAGNESIUM ION × 3
DAD 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;PEG, amonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 2.70 Å
R-free 0.272
|
|
2AJQ
Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
Deposited 2005-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
1–108(108 aa)
|
Mutation:Residues 5 and 7 mutated to Ala
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;273 K;A complex of 1x10^-4 M T7 DNA polymerase 5A7A:thioredoxin was assembled
with an equimolar amount of double stranded DNA substrate.
Crystallization
was achieved using a buffer containing 50mM HEPES pH 7.5, 10mM MgCl_2,
2mM DTT, and 0.5 mM terminal ddTTP Seed crystals were grown by hanging
drop vapor diffusion by mixing 1ul each of protein-DNA solution and a
reservoir solutions containing between 16 to 20% PEG 8000, 100mM ACES pH
7.5, 120 ammonium sulfate, 30mM MgCl2, and 5mM DTT. These crystals
were used to streak-seed a grid of protein/reservoir solutions with
concentrations of PEG 8000 between 13 to 15%. Pyramidal crystals
appeared overnight and reached a maximum size of ~150 X 150 X 100 um3
after 3 to 4 days. Crystals were harvested overnight in mother-liquor
containing 10 % PEG 400, temperature 273K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.60 Å
R-free 0.284
|
|
2AJQ
Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
Deposited 2005-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain I
1–108(108 aa)
|
Mutation:Residues 5 and 7 mutated to Ala
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;273 K;A complex of 1x10^-4 M T7 DNA polymerase 5A7A:thioredoxin was assembled
with an equimolar amount of double stranded DNA substrate.
Crystallization
was achieved using a buffer containing 50mM HEPES pH 7.5, 10mM MgCl_2,
2mM DTT, and 0.5 mM terminal ddTTP Seed crystals were grown by hanging
drop vapor diffusion by mixing 1ul each of protein-DNA solution and a
reservoir solutions containing between 16 to 20% PEG 8000, 100mM ACES pH
7.5, 120 ammonium sulfate, 30mM MgCl2, and 5mM DTT. These crystals
were used to streak-seed a grid of protein/reservoir solutions with
concentrations of PEG 8000 between 13 to 15%. Pyramidal crystals
appeared overnight and reached a maximum size of ~150 X 150 X 100 um3
after 3 to 4 days. Crystals were harvested overnight in mother-liquor
containing 10 % PEG 400, temperature 273K, VAPOR DIFFUSION, HANGING DROP
|
Resolution 2.60 Å
R-free 0.284
|
|
2EIO
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:E101C
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;20% PEG 3350, 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.60 Å
R-free 0.292
|
|
2EIO
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–109(108 aa)
|
Mutation:E101C
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;20% PEG 3350, 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.60 Å
R-free 0.292
|
|
2EIO
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–109(108 aa)
|
Mutation:E101C
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;20% PEG 3350, 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.60 Å
R-free 0.292
|
|
2EIO
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–109(108 aa)
|
Mutation:E101C
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;289 K;20% PEG 3350, 0.1M TRIS, 0.2M MAGNESIUM CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 289K
|
Resolution 2.60 Å
R-free 0.292
|
|
2EIQ
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:T89C
|
CU COPPER (II) ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;40% MPD, 1MM CUPRIC ACETATE, 10MM SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.90 Å
R-free 0.218
|
|
2EIQ
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–109(108 aa)
|
Mutation:T89C
|
CU COPPER (II) ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;40% MPD, 1MM CUPRIC ACETATE, 10MM SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.90 Å
R-free 0.218
|
|
2EIQ
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–109(108 aa)
|
Mutation:T89C
|
CU COPPER (II) ION × 2
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;40% MPD, 1MM CUPRIC ACETATE, 10MM SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.90 Å
R-free 0.218
|
|
2EIR
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:E101C/A105C
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;45% MPD, 5MM CUPRIC ACETATE, 0.1M SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.50 Å
R-free 0.311
|
|
2EIR
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–109(108 aa)
|
Mutation:E101C/A105C
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;45% MPD, 5MM CUPRIC ACETATE, 0.1M SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.50 Å
R-free 0.311
|
|
2EIR
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
2–109(108 aa)
|
Mutation:E101C/A105C
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;45% MPD, 5MM CUPRIC ACETATE, 0.1M SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.50 Å
R-free 0.311
|
|
2EIR
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
Deposited 2007-03-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
2–109(108 aa)
|
Mutation:E101C/A105C
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;277 K;45% MPD, 5MM CUPRIC ACETATE, 0.1M SODIUM ACETATE, pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.50 Å
R-free 0.311
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 10
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
|
Chain B
1–108(108 aa)
Chain C
1–108(108 aa)
Chain D
1–108(108 aa)
|
Mutation:G74S
Mutation:G74S
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 11
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–108(108 aa)
Chain G
1–108(108 aa)
|
Mutation:G74S
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 12
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–108(108 aa)
Chain D
1–108(108 aa)
|
Mutation:G74S
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–108(108 aa)
|
Mutation:G74S
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–108(108 aa)
|
Mutation:G74S
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–108(108 aa)
|
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain E
1–108(108 aa)
|
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 6
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain F
1–108(108 aa)
|
Mutation:G74S
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 7
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain G
1–108(108 aa)
|
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 8
Protein homooligomer
Homooligomer;Protein × 5
PDB declaration: pentameric
|
Chain B
1–108(108 aa)
Chain C
1–108(108 aa)
Chain D
1–108(108 aa)
Chain F
1–108(108 aa)
Chain G
1–108(108 aa)
|
Mutation:G74S
Mutation:G74S
Mutation:G74S
Mutation:G74S
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FCH
Crystal Structure of Thioredoxin Mutant G74S
Deposited 2005-12-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 9
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–108(108 aa)
Chain E
1–108(108 aa)
|
Mutation:G74S
Mutation:G74S
|
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 5.4;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 5.4, Counter-diffusion, temperature 277K
|
Resolution 2.60 Å
R-free 0.276
|
|
2FD3
Crystal Structure of Thioredoxin Mutant P34H
Deposited 2005-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Mutation:P34H
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 8;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 8.0, Counter-diffusion, temperature 277K
|
Resolution 2.45 Å
R-free 0.305
|
|
2FD3
Crystal Structure of Thioredoxin Mutant P34H
Deposited 2005-12-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–108(108 aa)
|
Mutation:P34H
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
COUNTER-DIFFUSION;pH 8;277 K;60% (v/v) MPD, Hepes 15 mM, 1 mM Ac2Cu, pH 8.0, Counter-diffusion, temperature 277K
|
Resolution 2.45 Å
R-free 0.305
|
|
2TIR
CRYSTAL STRUCTURE ANALYSIS OF A MUTANT ESCHERICHIA COLI THIOREDOXIN IN WHICH LYSINE 36 IS REPLACED BY GLUTAMIC ACID
Deposited 1993-01-10
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
|
|
2TRX
CRYSTAL STRUCTURE OF THIOREDOXIN FROM ESCHERICHIA COLI AT 1.68 ANGSTROMS RESOLUTION
Deposited 1990-03-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 4
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.68 Å
|
|
2TRX
CRYSTAL STRUCTURE OF THIOREDOXIN FROM ESCHERICHIA COLI AT 1.68 ANGSTROMS RESOLUTION
Deposited 1990-03-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 1
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.68 Å
|
|
2TRX
CRYSTAL STRUCTURE OF THIOREDOXIN FROM ESCHERICHIA COLI AT 1.68 ANGSTROMS RESOLUTION
Deposited 1990-03-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 2
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 8
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.68 Å
|
|
2TRX
CRYSTAL STRUCTURE OF THIOREDOXIN FROM ESCHERICHIA COLI AT 1.68 ANGSTROMS RESOLUTION
Deposited 1990-03-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–108(108 aa)
|
Not recorded
|
CU COPPER (II) ION × 2
MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 6
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.68 Å
|
|
3DYR
Crystal structure of E. coli thioredoxin mutant I76T in its oxidized form
Deposited 2008-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:I76T
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
R-free 0.290
|
|
3DYR
Crystal structure of E. coli thioredoxin mutant I76T in its oxidized form
Deposited 2008-07-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–109(108 aa)
|
Mutation:I76T
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 2.00 Å
R-free 0.290
|
|
4HU7
E. coli thioredoxin variant with Pro76 as single proline residue
Deposited 2012-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A
|
CU COPPER (II) ION × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;277.15 K;20 mM acetic acid-NaOH, 2 mM CuCl2, 35 % (v/v) MPD , pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
|
Resolution 1.40 Å
R-free 0.198
|
|
4HU7
E. coli thioredoxin variant with Pro76 as single proline residue
Deposited 2012-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;277.15 K;20 mM acetic acid-NaOH, 2 mM CuCl2, 35 % (v/v) MPD , pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
|
Resolution 1.40 Å
R-free 0.198
|
|
4HU7
E. coli thioredoxin variant with Pro76 as single proline residue
Deposited 2012-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–109(108 aa)
Chain B
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A
Mutation:P34A, P40A, P64A, P68A
|
CU COPPER (II) ION × 2
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;277.15 K;20 mM acetic acid-NaOH, 2 mM CuCl2, 35 % (v/v) MPD , pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
|
Resolution 1.40 Å
R-free 0.198
|
|
4HU9
E. coli thioredoxin variant with (4S)-FluoroPro76 as single proline residue
Deposited 2012-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;277.15 K;20 mM acetic acid-NaOH, 2 mM CuCl2, 30 % (v/v) MPD, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
|
Resolution 1.55 Å
R-free 0.210
|
|
4HUA
E. coli thioredoxin variant with (4R)-FluoroPro76 as single proline residue
Deposited 2012-11-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
CU COPPER (II) ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.5;277.15 K;20 mM acetic acid-NaOH pH 4.5, 2 mM CuCl2, 35 % (v/v) MPD, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
|
Resolution 1.10 Å
R-free 0.172
|
|
4X43
Structure of proline-free E. coli Thioredoxin
Deposited 2014-12-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: Monomeric
|
Chain A
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A, P76A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;10% (w/v) PEG 1000, 10% (w/v) PEG 8000
|
Resolution 1.65 Å
R-free 0.218
|
|
4X43
Structure of proline-free E. coli Thioredoxin
Deposited 2014-12-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: Monomeric
|
Chain B
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A, P76A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;10% (w/v) PEG 1000, 10% (w/v) PEG 8000
|
Resolution 1.65 Å
R-free 0.218
|
|
4X43
Structure of proline-free E. coli Thioredoxin
Deposited 2014-12-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein monomer
Monomer;Protein × 1
PDB declaration: Monomeric
|
Chain C
2–109(108 aa)
|
Mutation:P34A, P40A, P64A, P68A, P76A
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;10% (w/v) PEG 1000, 10% (w/v) PEG 8000
|
Resolution 1.65 Å
R-free 0.218
|
|
5XOC
Crystal structure of human Smad3-FoxH1 complex
Deposited 2017-05-27
|
Different construct
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 6
PDB declaration: hexameric
|
Chain B
2–109(108 aa)
Fragment:UNP residues 2-109,UNP residues 322-345
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.4;293 K;0.1 M citrate pH 5.4, 0.8% ethylene imine polymer and 0.5 M NaCl
|
Resolution 2.40 Å
R-free 0.235
|
|
6GD1
Structure of HuR RRM3
Deposited 2018-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–109(109 aa)
Chain B
1–109(109 aa)
|
Not recorded
|
NA SODIUM ION × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;23% (w/v) PEG 2000 MME, 0.1 M potassium thiocyanate
|
Resolution 2.01 Å
R-free 0.244
|
|
6H1Y
CRYSTAL STRUCTURE OF A CHIMERIC VARIANT OF THIOREDOXIN FROM ESCHERICHIA COLI
Deposited 2018-07-12
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
2–14(13 aa)
Chain A
24–109(86 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Crystals were obtained with a protein concentration of 20-25 mg/ml. The composition of the reservoir solution was 17% (w/v) PEG10000, 0.1 M ammonium acetate and 0.1 M BIS-TRIS buffer, pH 5.5.
|
Resolution 2.99 Å
R-free 0.259
|
|
6H1Y
CRYSTAL STRUCTURE OF A CHIMERIC VARIANT OF THIOREDOXIN FROM ESCHERICHIA COLI
Deposited 2018-07-12
|
Different construct
Different mutation/modification
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
2–14(13 aa)
Chain B
24–109(86 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;Crystals were obtained with a protein concentration of 20-25 mg/ml. The composition of the reservoir solution was 17% (w/v) PEG10000, 0.1 M ammonium acetate and 0.1 M BIS-TRIS buffer, pH 5.5.
|
Resolution 2.99 Å
R-free 0.259
|
|
6H7J
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
2–109(108 aa)
|
Mutation:C32S,C35S
|
5FW ISOPRENALINE × 1
NA SODIUM ION × 1
2CV HEGA-10 × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.80 Å
R-free 0.317
|
|
6H7J
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–109(108 aa)
|
Mutation:C32S,C35S
|
5FW ISOPRENALINE × 1
NA SODIUM ION × 1
2CV HEGA-10 × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.80 Å
R-free 0.317
|
|
6H7L
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST DOBUTAMINE AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
2–109(108 aa)
|
Mutation:C32S,C35S
|
2CV HEGA-10 × 6
NA SODIUM ION × 1
Y00 DOBUTAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.70 Å
R-free 0.278
|
|
6H7L
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST DOBUTAMINE AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–109(108 aa)
|
Mutation:C32S,C35S
|
2CV HEGA-10 × 3
NA SODIUM ION × 1
Y00 DOBUTAMINE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.70 Å
R-free 0.278
|
|
6H7M
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST SALBUTAMOL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
2–109(108 aa)
|
Mutation:C32S,C35S
|
2CV HEGA-10 × 3
68H SALBUTAMOL × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.76 Å
R-free 0.285
|
|
6H7M
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST SALBUTAMOL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–109(108 aa)
|
Mutation:C32S,C35S
|
2CV HEGA-10 × 4
68H SALBUTAMOL × 1
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.76 Å
R-free 0.285
|
|
6H7N
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST XAMOTEROL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
2–109(108 aa)
|
Mutation:C32S,C35S
|
FVK ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy)propyl]amino]ethyl]morpholine-4-carboxamide × 1
NA SODIUM ION × 1
2CV HEGA-10 × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.50 Å
R-free 0.266
|
|
6H7N
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST XAMOTEROL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–109(108 aa)
|
Mutation:C32S,C35S
|
FVK ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy)propyl]amino]ethyl]morpholine-4-carboxamide × 1
NA SODIUM ION × 1
2CV HEGA-10 × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.50 Å
R-free 0.266
|
|
6H7O
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND WEAK PARTIAL AGONIST CYANOPINDOLOL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain E
2–109(108 aa)
|
Mutation:C32S,C35S
|
P32 Cyanopindolol × 1
NA SODIUM ION × 1
2CV HEGA-10 × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.80 Å
R-free 0.274
|
|
6H7O
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND WEAK PARTIAL AGONIST CYANOPINDOLOL AND NANOBODY Nb6B9
Deposited 2018-07-31
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain F
2–109(108 aa)
|
Mutation:C32S,C35S
|
P32 Cyanopindolol × 1
NA SODIUM ION × 1
2CV HEGA-10 × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.80 Å
R-free 0.274
|
|
6IBL
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST FORMOTEROL AND NANOBODY Nb80
Deposited 2018-11-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain A
2–109(108 aa)
|
Mutation:C32S,C35S,C32S,C35S
|
H98 ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide × 1
NA SODIUM ION × 1
2CV HEGA-10 × 5
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.70 Å
R-free 0.277
|
|
6IBL
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST FORMOTEROL AND NANOBODY Nb80
Deposited 2018-11-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Insufficient information
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
2–109(108 aa)
|
Mutation:C32S,C35S,C32S,C35S
|
H98 ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide × 1
NA SODIUM ION × 1
2CV HEGA-10 × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;291 K;0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
|
Resolution 2.70 Å
R-free 0.277
|
|
6LUR
Human PUF60 UHM domain (thioredoxin fusion) in complex with a small molecule binder
Deposited 2020-01-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Homooligomer;Protein × 8
PDB declaration: octameric
|
Chain A
1–109(109 aa)
Chain B
1–109(109 aa)
Chain C
1–109(109 aa)
Chain D
1–109(109 aa)
Chain E
1–109(109 aa)
Chain F
1–109(109 aa)
Chain G
1–109(109 aa)
Chain H
1–109(109 aa)
|
Not recorded
|
EVU 4-[2-[4-(aminomethyl)phenyl]phenyl]piperazin-2-one × 8
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.3-1.6M AmSO4, 0.2M potassium formate
|
Resolution 2.00 Å
R-free 0.253
|
|
6Y4Z
The crystal structure of human MACROD2 in space group P43212
Deposited 2020-02-24
|
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–109(109 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.7;293 K;0.2 M Ammonium tartarate dibasic pH 6.7, 20% PEG 3350
|
Resolution 1.90 Å
R-free 0.228
|
|
6Y4Z
The crystal structure of human MACROD2 in space group P43212
Deposited 2020-02-24
|
Different structure-quality metrics
|
Assembly 2
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain B
1–109(109 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.7;293 K;0.2 M Ammonium tartarate dibasic pH 6.7, 20% PEG 3350
|
Resolution 1.90 Å
R-free 0.228
|
|
6Y4Z
The crystal structure of human MACROD2 in space group P43212
Deposited 2020-02-24
|
Different structure-quality metrics
|
Assembly 3
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain C
1–109(109 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.7;293 K;0.2 M Ammonium tartarate dibasic pH 6.7, 20% PEG 3350
|
Resolution 1.90 Å
R-free 0.228
|
|
6Y4Z
The crystal structure of human MACROD2 in space group P43212
Deposited 2020-02-24
|
Different structure-quality metrics
|
Assembly 4
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain D
1–109(109 aa)
|
Not recorded
|
TLA L(+)-TARTARIC ACID × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.7;293 K;0.2 M Ammonium tartarate dibasic pH 6.7, 20% PEG 3350
|
Resolution 1.90 Å
R-free 0.228
|
|
6YEV
Crystal structure of MsrA C206 and Trx C35S complex from Escherichia coli
Deposited 2020-03-25
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain E
1–109(109 aa)
|
Mutation:Cys35Ser
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277.15 K;0.1M BIS-TRIS propane pH 6.5, 0.2M trisodium citrate, 20% PEG 3350
|
Resolution 2.94 Å
R-free 0.258
|
|
6YEV
Crystal structure of MsrA C206 and Trx C35S complex from Escherichia coli
Deposited 2020-03-25
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain F
1–109(109 aa)
|
Mutation:Cys35Ser
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277.15 K;0.1M BIS-TRIS propane pH 6.5, 0.2M trisodium citrate, 20% PEG 3350
|
Resolution 2.94 Å
R-free 0.258
|
|
6YEV
Crystal structure of MsrA C206 and Trx C35S complex from Escherichia coli
Deposited 2020-03-25
|
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain G
1–109(109 aa)
|
Mutation:Cys35Ser
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;277.15 K;0.1M BIS-TRIS propane pH 6.5, 0.2M trisodium citrate, 20% PEG 3350
|
Resolution 2.94 Å
R-free 0.258
|
|
7SCD
Ternary complex of fixed-arm Trx-3ost5 (I299E) with 8mer-1 octasaccharide substrate and co-factor product PAP
Deposited 2021-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Mutation:I299E
|
A3P ADENOSINE-3'-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;295 K;0.2M ammonium tartrate, 20% (w/v) PEG3350
|
Resolution 2.90 Å
R-free 0.252
|
|
7SCE
Ternary complex of fixed-arm Trx-3ost5 (I299E) with 8mer-2 octasaccharide substrate and co-factor product PAP
Deposited 2021-09-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
1–108(108 aa)
|
Mutation:I299E
|
A3P ADENOSINE-3'-5'-DIPHOSPHATE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.6;295 K;85mM sodium acetate pH 4.6, 0.17M ammonium acetate, 25.5% (w/v) PEG4000, 15% (v/v) ethylene glycol
|
Resolution 2.75 Å
R-free 0.246
|
|
8KGZ
Crystal structure of single-chain Fv antibody against antigen peptide from SARS-CoV2 S-spike protein
Deposited 2023-08-20
|
Different construct
Different mutation/modification
Different oligomeric state
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
1–109(109 aa)
Chain B
1–109(109 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;25% PEG 3350, 0.1M HEPES pH7.5
|
Resolution 2.21 Å
R-free 0.321
|
|
8S2N
Xenorhabdus bovienii Rhs toxin TreTu complex with TrxA and TriTu immunity protein
Deposited 2024-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain C
2–109(108 aa)
|
Not recorded
|
PEG DI(HYDROXYETHYL)ETHER × 3
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.2 M Ammonium sulfate, 0.02 M Sodium chloride, 0.02 M Sodium acetate pH 4.0, 33 % v/v PEG 200
|
Resolution 2.11 Å
R-free 0.232
|