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6zcl

Coxsackievirus B3 in complex with capsid binder compound 17

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

capsid protein VP1

OrganismNot specified

UniProt P03313

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 240 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid × 60 MYRISTIC ACID × 60 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 4 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid × 1 MYRISTIC ACID × 1 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 20 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid × 5 MYRISTIC ACID × 5 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 24 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid × 6 MYRISTIC ACID × 6 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 4 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid × 1 MYRISTIC ACID × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
3cdu 4wfx 4wfy 4wfz 4y2a 7quw 8s6f

7 assemblies

Homodimer
3cdw

1 assemblies

Homotetramer
6zcl 6zcl 7vxh 7vxh

4 assemblies

Other homooligomers
6gzv 6zcl 6zcl 6zcl 7vxh 7vxh 7vxh 7vxl 7vxl 7vxl 7vxl 7vxl

17 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
7lms 7vxz 7vxz 7vxz 7vxz 7vxz 7vy5 7vy5 7vy5 7vy5 7vy5 7vyk

24 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name POLG_CXB3N
Isoform —
PDB entities 1, 2, 3, 4
Chains and sequence ranges Author chain A； PDBConstruct 1–269； UniProt 583–851 Author chain B； PDBConstruct 1–252； UniProt 79–330 Author chain C； PDBConstruct 1–237； UniProt 333–569 Author chain D； PDBConstruct 1–68； UniProt 2–69

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6zcl
Deposition date deposition_date2020-06-11
Structure title titleCoxsackievirus B3 in complex with capsid binder compound 17
Keywords keywordsEnterovirus, coxackievirus B4, capsid binder, inhibitor, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6zcl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6zcl__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6zcl__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)133.60 Å
Total Rg133.60 Å
Atom count382200
Residues48780
Excluded volume6775500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6zcl__assembly_1__model_1 240-meric （240） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6zcl__assembly_2__model_1 tetrameric （4） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 6zcl__assembly_3__model_1 eicosameric （20） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 6zcl__assembly_4__model_1 24-meric （24） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 6zcl__assembly_5__model_1 tetrameric （4） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd6zcla_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
Domain ID domain_idd6zclc_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
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7. Citations (1)