Thermococcus gorgonarius
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | CALCIUM ION × 4 | Consistent with protein count |
| UniProt name | DPOL_THEGO |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–773； UniProt 1–773 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 7b07 |
| Deposition date deposition_date | 2020-11-18 |
| Structure title title | TgoT_6G12 apo |
| Keywords keywords | archaea, polymerase, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 32.31 Å |
| Rg (electron density) | 31.34 Å |
| Total Rg | 32.04 Å |
| Atom count | 6154 |
| Residues | 749 |
| Excluded volume | 110540 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d7b07a1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.55 — Ribonuclease H-like motif |
| Superfamily Superfamily superfamily | c.55.3 — Ribonuclease H-like |
| Family Family family | c.55.3.5 — DnaQ-like 3'-5' exonuclease |
| Domain ID domain_id | d7b07a2 |
| Class class | e — Multi-domain proteins (alpha and beta) |
| Fold Fold fold | e.8 — DNA/RNA polymerases |
| Superfamily Superfamily superfamily | e.8.1 — DNA/RNA polymerases |
| Family Family family | e.8.1.1 — DNA polymerase I |
| Domain ID domain_id | 7b07A01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 342 — DNA Polymerase; Chain A, domain 1 |
| Homologous superfamily homologous superfamily | 10 — DNA Polymerase, chain B, domain 1 |
| Domain ID domain_id | 7b07A02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 30 — 2-Layer Sandwich |
| Topology topology | 420 — Nucleotidyltransferase; domain 5 |
| Homologous superfamily homologous superfamily | 10 — Ribonuclease H-like superfamily/Ribonuclease H |
| Domain ID domain_id | 7b07A03 |
| Class class | 1 — Mainly Alpha |
| Architecture architecture | 10 — Orthogonal Bundle |
| Topology topology | 132 — Topoisomerase I; Chain A, domain 4 |
| Homologous superfamily homologous superfamily | 60 — B family DNA polymerase, thumb domain |