9gp8

Crystal Structure of TgoT_PGLVVWA XNA Polymerase (Apo)

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA polymerase

Thermococcus gorgonarius

UniProt P56689

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 SULFATE ION × 2 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DPOL_THEGO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–773; UniProt 1–773

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9gp8
Deposition date deposition_date2024-09-07
Structure title titleCrystal Structure of TgoT_PGLVVWA XNA Polymerase (Apo)
Keywords keywords;Xenonucleic Acid, XNA Polymerase, Synthetic Biology, Enzyme Structure, DNA/RNA Binding, Nucleotide Analogs, Polymerase Function, Protein Engineering, Xenobiology, Catalytic Mechanism, Enzyme Kinetics, Mutagenesis, Molecular Biology, Nucleic Acid Synthesis, Protein-Nucleic Acid Interaction, XNA Synthesis, Structural Biology, Active Site, Substrate Specificity, Enzyme Evolution, Alternative Nucleotides, Phosphonate, DNA BINDING PROTEIN ;; DNA BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9gp8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9gp8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9gp8__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)31.79 Å
Rg (electron density)30.80 Å
Total Rg31.53 Å
Atom count6237
Residues759
Excluded volume111900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9gp8__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)