7b56

Crystal structure of CaMKII-actinin complex bound to AMPPNP

Method: X-RAY DIFFRACTION Dmax: 69.1 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calcium/calmodulin-dependent protein kinase type II subunit alpha

Mus musculus

UniProt P11798

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 1–315 Not recorded Alpha-actinin-2 × 1 (P35609) ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 MG MAGNESIUM ION × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M MES pH 6.0, 20% w/v PEG4000, 0.2 M Lithium Sulfate Resolution 1.45 Å R-free 0.215

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCC2A_MOUSE
Isoform
PDB entities 1
Chains and sequence ranges Author chain B; PDBConstruct 3–317; UniProt 1–315

Alpha-actinin-2

Homo sapiens

UniProt P35609

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 825–894 Not recorded Calcium/calmodulin-dependent protein kinase type II subunit alpha × 1 (P11798) ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 MG MAGNESIUM ION × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;277 K;0.1 M MES pH 6.0, 20% w/v PEG4000, 0.2 M Lithium Sulfate Resolution 1.45 Å R-free 0.215

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACTN2_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 4–73; UniProt 825–894

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7b56

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7b56
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7b56
Deposition date deposition_date2020-12-03
Structure title titleCrystal structure of CaMKII-actinin complex bound to AMPPNP
Keywords keywordsCaMKII, actinin, dendritic spine, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.27
Radius of gyration Rg (electron density) rg_electron21.33
Forward intensity I(0) i029687400.00
Molecular weight molecular_weight41835.0 kDa
Excluded volume excluded_volume52374 ų
Envelope volume envelope_volume60807 ų
Hydration-shell volume shell_volume23784 ų
Envelope diameter envelope_diameter72.2
Shell Rg shell_rg28.07
Envelope Rg envelope_rg21.41
Shape Rg shape_rg21.33
Total Rg total_rg22.15
Total atoms total_atoms2944
Residues n_residues371
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax69.1
Rg (real space) rg_real22.16
Rg uncertainty (real space) rg_real_error0.31
I(0) (real space) i0_real2.9690e+07
I(0) uncertainty (real space) i0_real_error3.3290e+05
Rg (reciprocal space) rg_reciprocal22.19
I(0) (reciprocal space) i0_reciprocal29690000.0000
Solution quality estimate total_estimate0.9080
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.2
Skewness Skewness skewness0.149
Kurtosis Kurtosis kurtosis-0.513
Angular range angular_range— – 0.3550 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha6513000.0000
Real-space data points n_real_points67
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.938; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.992

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)