7a8t

Crystal structure of sarcomeric protein FATZ-1 (mini-FATZ-1 construct) in complex with rod domain of alpha-actinin-2

Method: X-RAY DIFFRACTION Dmax: 233.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Alpha-actinin-2

Homo sapiens

UniProt P35609

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 274–746 Not recorded Myozenin-1 × 2 (Q9NP98) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;295 K;100 mM HEPES (pH 7.0), 16% w/v Jeffamine ED-2003 Resolution 2.69 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACTN2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 4–476; UniProt 274–746

Myozenin-1

Homo sapiens

UniProt Q9NP98

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 176–263 Not recorded Alpha-actinin-2 × 2 (P35609) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7;295 K;100 mM HEPES (pH 7.0), 16% w/v Jeffamine ED-2003 Resolution 2.69 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MYOZ1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 5–92; UniProt 176–263

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7a8t

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7a8t
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7a8t
Deposition date deposition_date2020-08-31
Structure title titleCrystal structure of sarcomeric protein FATZ-1 (mini-FATZ-1 construct) in complex with rod domain of alpha-actinin-2
Keywords keywordsZ-disk complex, F-actin crosslinking protein, scaffolding protein, fuzzy complex, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier68.90
Radius of gyration Rg (electron density) rg_electron71.48
Forward intensity I(0) i059462100.00
Molecular weight molecular_weight61267.0 kDa
Excluded volume excluded_volume76055 ų
Envelope volume envelope_volume128650 ų
Hydration-shell volume shell_volume21323 ų
Envelope diameter envelope_diameter254.3
Shell Rg shell_rg40.62
Envelope Rg envelope_rg72.12
Shape Rg shape_rg71.46
Total Rg total_rg70.33
Total atoms total_atoms4309
Residues n_residues519
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax233.6
Rg (real space) rg_real70.03
Rg uncertainty (real space) rg_real_error3.25
I(0) (real space) i0_real5.9430e+07
I(0) uncertainty (real space) i0_real_error1.2950e+06
Rg (reciprocal space) rg_reciprocal64.56
I(0) (reciprocal space) i0_reciprocal58870000.0000
Solution quality estimate total_estimate0.5702
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.3
Skewness Skewness skewness0.639
Kurtosis Kurtosis kurtosis-0.489
Angular range angular_range— – 0.1150 −1
Current regularization parameter α current_alpha0.0006
Highest regularization parameter α highest_alpha2676000.0000
Real-space data points n_real_points24
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.012; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.030; Smooth: 0.348

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd7a8ta1
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.1 — Spectrin repeat
Family Family familya.7.1.1 — Spectrin repeat
Domain ID domain_idd7a8ta2
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.1 — Spectrin repeat
Family Family familya.7.1.1 — Spectrin repeat
Domain ID domain_idd7a8ta3
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.1 — Spectrin repeat
Family Family familya.7.1.1 — Spectrin repeat
Domain ID domain_idd7a8ta4
Class classa — All alpha proteins
Fold Fold folda.7 — Spectrin repeat-like
Superfamily Superfamily superfamilya.7.1 — Spectrin repeat
Family Family familya.7.1.1 — Spectrin repeat
Domain ID domain_idd7a8ta5
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

8. Citations (1)

9. Files and Curves (10)