7bod

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Method: ELECTRON MICROSCOPY
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

30S ribosomal protein S4

物种未注明

UniProt P0A7V8

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS4_ECOLI
Isoform —
PDB实体 2
链与序列区间 作者链 D; PDB构建体 1–206; UniProt 1–206

30S ribosomal protein S5

物种未注明

UniProt P0A7W1

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS5_ECOLI
Isoform —
PDB实体 3
链与序列区间 作者链 E; PDB构建体 1–167; UniProt 1–167

30S ribosomal protein S6

物种未注明

UniProt P02358

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS6_ECOLI
Isoform —
PDB实体 4
链与序列区间 作者链 F; PDB构建体 1–135; UniProt 1–135

30S ribosomal protein S8

物种未注明

UniProt P0A7W7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS8_ECOLI
Isoform —
PDB实体 5
链与序列区间 作者链 H; PDB构建体 1–130; UniProt 1–130

30S ribosomal protein S11

物种未注明

UniProt P0A7R9

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS11_ECOLI
Isoform —
PDB实体 6
链与序列区间 作者链 K; PDB构建体 1–129; UniProt 1–129

30S ribosomal protein S12

物种未注明

UniProt P0A7S3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS12_ECOLI
Isoform —
PDB实体 7
链与序列区间 作者链 L; PDB构建体 1–124; UniProt 1–124

30S ribosomal protein S15

物种未注明

UniProt P0ADZ4

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS15_ECOLI
Isoform —
PDB实体 8
链与序列区间 作者链 O; PDB构建体 1–89; UniProt 1–89

30S ribosomal protein S16

物种未注明

UniProt P0A7T3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS16_ECOLI
Isoform —
PDB实体 9
链与序列区间 作者链 P; PDB构建体 1–82; UniProt 1–82

30S ribosomal protein S17

物种未注明

UniProt P0AG63

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS17_ECOLI
Isoform —
PDB实体 10
链与序列区间 作者链 Q; PDB构建体 1–84; UniProt 1–84

30S ribosomal protein S18

物种未注明

UniProt P0A7T7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S20 × 1 (P0A7U7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS18_ECOLI
Isoform —
PDB实体 11
链与序列区间 作者链 R; PDB构建体 1–75; UniProt 1–75

30S ribosomal protein S20

物种未注明

UniProt P0A7U7

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S21 × 1 (P68679) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS20_ECOLI
Isoform —
PDB实体 12
链与序列区间 作者链 T; PDB构建体 1–87; UniProt 1–87

30S ribosomal protein S21

物种未注明

UniProt P68679

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白–RNA 异源复合物 蛋白 12 RNA 1 16S rRNA (body domain of 30S subunit) × 1 30S ribosomal protein S4 × 1 (P0A7V8) 30S ribosomal protein S5 × 1 (P0A7W1) 30S ribosomal protein S6 × 1 (P02358) 30S ribosomal protein S8 × 1 (P0A7W7) 30S ribosomal protein S11 × 1 (P0A7R9) 30S ribosomal protein S12 × 1 (P0A7S3) 30S ribosomal protein S15 × 1 (P0ADZ4) 30S ribosomal protein S16 × 1 (P0A7T3) 30S ribosomal protein S17 × 1 (P0AG63) 30S ribosomal protein S18 × 1 (P0A7T7) 30S ribosomal protein S20 × 1 (P0A7U7) MAGNESIUM ION × 101 与全部聚合物一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RS21_ECOLI
Isoform —
PDB实体 13
链与序列区间 作者链 U; PDB构建体 1–71; UniProt 1–71

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id7bod
沉积日期 deposition_date2021-01-25
结构标题 titleBacterial 30S ribosomal subunit assembly complex state M (body domain)
关键词 keywordsCryo-EM, 30S biogenesis, ribosome assembly, RbfA, RsgA, YjeQ, RimP, KsgA, RsmA, RIBOSOME; RIBOSOME
实验方法 methodELECTRON MICROSCOPY
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

7bod__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

7bod__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

7bod__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)55.38 Å
Rg(电子密度)55.97 Å
总 Rg55.99 Å
原子数33389
残基数2358
排除体积509280 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 7bod__assembly_1__model_1 tridecameric (13) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (14)

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6. 折叠分类 (SCOP + CATH) 3 domains

CATH v4.4 (3 domains)

结构域编号 domain_id7bodD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology1050 — Ribosomal Protein S4 Delta 41; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Ribosomal protein S4/S9, N-terminal domain
结构域编号 domain_id7bodD02
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology290 — Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
同源超家族 H-superfamily homologous superfamily10 — RNA-binding S4 domain
结构域编号 domain_id7bodE01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology230 — Ribosomal Protein S5; domain 2
同源超家族 H-superfamily homologous superfamily10 —
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7. 引用文献 (1)