7jyo

JAK2 JH2 in complex with JAK064

Method: X-RAY DIFFRACTION Dmax: 65.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Tyrosine-protein kinase JAK2

Homo sapiens

UniProt O60674

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 536–812 Mutation:W659A, W777A, F794H VPS 3-({4-amino-6-[(4-cyanophenyl)amino]-1,3,5-triazin-2-yl}oxy)benzoic acid × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;277.15 K;0.1M TRIS, PH 8.0 0.2M SODIUM ACETATE, 0.001 M TCEP, 12-24% PEG 4,000 Resolution 2.16 Å R-free 0.246

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

161 other PDB entries and 251 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name JAK2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–277; UniProt 536–812

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7jyo

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7jyo
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7jyo
Deposition date deposition_date2020-08-31
Structure title titleJAK2 JH2 in complex with JAK064
Keywords keywordsPSEUDOKINASE DOMAIN, INHIBITOR, COMPLEX, TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX; TRANSFERASE/INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.83
Radius of gyration Rg (electron density) rg_electron18.56
Forward intensity I(0) i014938300.00
Molecular weight molecular_weight29226.0 kDa
Excluded volume excluded_volume36596 ų
Envelope volume envelope_volume42675 ų
Hydration-shell volume shell_volume19205 ų
Envelope diameter envelope_diameter66.3
Shell Rg shell_rg25.12
Envelope Rg envelope_rg18.93
Shape Rg shape_rg18.59
Total Rg total_rg19.44
Total atoms total_atoms2066
Residues n_residues270
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax65.5
Rg (real space) rg_real19.74
Rg uncertainty (real space) rg_real_error0.50
I(0) (real space) i0_real1.4940e+07
I(0) uncertainty (real space) i0_real_error2.0080e+05
Rg (reciprocal space) rg_reciprocal19.76
I(0) (reciprocal space) i0_reciprocal14940000.0000
Solution quality estimate total_estimate0.8031
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary24.0
Skewness Skewness skewness0.260
Kurtosis Kurtosis kurtosis-0.299
Angular range angular_range— – 0.4000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3748000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.813; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd7jyoa_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.144 — Protein kinase-like (PK-like)
Superfamily Superfamily superfamilyd.144.1 — Protein kinase-like (PK-like)
Family Family familyd.144.1.0 — automated matches

8. Citations (1)

9. Files and Curves (10)