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7kp3

Adeno-associated virus serotype 5 at 2.1 Angstroms resolution, AAV5

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

Adeno-associated virus - 5

UniProt Q9YIJ1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 No other associated polymer Consistent with protein count
2 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count
3 Protein homooligomer Homooligomer Protein 5 No other associated polymer Consistent with protein count
4 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
5 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
3ntt 3ntt 6jct 6jct 7kp3 7kp3

6 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
3ntt 3ntt 3ntt 3ntt 6jct 6jct 6jct 7kp3 7kp3 7kp3 9dc7 9umb

12 assemblies

Heteromeric or nucleic-acid complex
6jcs 6jcs 6jcs 6jcs 6jcs 7kpn 7kpn 7kpn 7kpn 7kpn 9dcb 9dcc

12 assemblies

View Construct and Data Evidence
UniProt name Q9YIJ1_9VIRU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–723； UniProt 2–724

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7kp3
Deposition date deposition_date2020-11-10
Structure title titleAdeno-associated virus serotype 5 at 2.1 Angstroms resolution, AAV5
Keywords keywordsAAV5, AAV, AAV-5, Adeno Associated Virus, VIRUS LIKE PARTICLE, parvovirus, virus, gene therapy; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7kp3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7kp3__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7kp3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)108.90 Å
Total Rg109.10 Å
Atom count246720
Residues30960
Excluded volume4318900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7kp3__assembly_1__model_1 60-meric （60） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 7kp3__assembly_2__model_1 monomeric （1） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 7kp3__assembly_3__model_1 pentameric （5） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 7kp3__assembly_4__model_1 hexameric （6） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 7kp3__assembly_5__model_1 monomeric （1） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd7kp3a_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.5 — ssDNA viruses
Family Family familyb.121.5.0 — automated matches
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7. Citations (1)