Structure of Modified adeno-associated viral vector, AAV5-BCD

Method: ELECTRON MICROSCOPY D_max: 249.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9umb
deposition_date	2025-04-21
title	Structure of Modified adeno-associated viral vector, AAV5-BCD
keywords	adeno-associated virus, AAV5, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	111.60 Å
i0	174027000000.00
molecular_weight	3488000.0 kDa
excluded_volume	4316500 Å³
envelope_volume	8381900 Å³
shell_volume	610170 Å³
envelope_diameter	290.0 Å
shell_rg	128.30 Å
envelope_rg	98.68 Å
shape_rg	111.60 Å
total_rg	111.80 Å
total_atoms	246600
n_residues	30960
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	249.9 Å
rg_real	111.70 Å
rg_real_error	0.13 Å
i0_real	1.6680e+11
i0_real_error	2.3830e+09
rg_reciprocal	124.50 Å
i0_reciprocal	181500000000.0000
total_estimate	0.8237
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	178.5 Å
skewness	-0.435
kurtosis	-0.644
angular_range	— – 0.0700 Å⁻¹
current_alpha	1.7970
highest_alpha	28040000000.0000
n_real_points	15
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.946; Stabil: 0.958; Sysdev: 1.000; Positv: 1.000; Valcen: 0.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.550 Å
resolution_low	2.550 Å
r_factor	0.3988
r_work	0.3988
r_free	—

resolution	2.55 Å
resolution_method	—
num_particles	285362

description	Capsid protein
formula_weight	80467.4 kDa
src_method	man
entity_count	60

Structure of Modified adeno-associated viral vector, AAV5-BCD

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4,5,6,7,8
atom_count	246600

organism	adeno-associated virus 5
ncbi_taxonomy_id	82300
host_organism	Homo sapiens

fit	/app/data/saxs_computation/um/9umb/9umb.fit
pddf	/app/data/pr_computation/um/9umb/9umb.pr.out
profile	/app/data/saxs_computation/um/9umb/9umb.dat