7mtq

CryoEM Structure of Full-Length mGlu2 in Inactive-State Bound to Antagonist LY341495

Method: ELECTRON MICROSCOPY Dmax: 172.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Metabotropic glutamate receptor 2

Homo sapiens

UniProt Q14416

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 18–872 Chain B; UniProt 18–872 Not recorded NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 Z99 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.65 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

28 other PDB entries and 28 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GRM2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–855; UniProt 18–872 Author chain B; PDBConstruct 1–855; UniProt 18–872

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7mtq

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7mtq
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id7mtq
Deposition date deposition_date2021-05-13
Structure title titleCryoEM Structure of Full-Length mGlu2 in Inactive-State Bound to Antagonist LY341495
Keywords keywords;Metabotropic Glutamate Receptor 2 (mGlu2) (mGluR2), Family C G protein-coupled receptor (GPCR), Heterotrimeric G protein, CryoEM structure, MEMBRANE PROTEIN, MEMBRANE PROTEIN-ANTAGONIST complex ;; MEMBRANE PROTEIN/ANTAGONIST
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier58.10
Radius of gyration Rg (electron density) rg_electron58.43
Forward intensity I(0) i0322805000.00
Molecular weight molecular_weight147130.0 kDa
Excluded volume excluded_volume182580 ų
Envelope volume envelope_volume322260 ų
Hydration-shell volume shell_volume48702 ų
Envelope diameter envelope_diameter184.6
Shell Rg shell_rg57.38
Envelope Rg envelope_rg55.89
Shape Rg shape_rg58.39
Total Rg total_rg58.56
Total atoms total_atoms10388
Residues n_residues1486
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax172.7
Rg (real space) rg_real58.64
Rg uncertainty (real space) rg_real_error1.99
I(0) (real space) i0_real3.2280e+08
I(0) uncertainty (real space) i0_real_error6.8420e+06
Rg (reciprocal space) rg_reciprocal57.57
I(0) (reciprocal space) i0_reciprocal322200000.0000
Solution quality estimate total_estimate0.7667
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary38.4
Skewness Skewness skewness0.329
Kurtosis Kurtosis kurtosis-0.972
Angular range angular_range— – 0.1350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12610000.0000
Real-space data points n_real_points28
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.777; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.632; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id7mtqA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily2300 — Response regulator
Domain ID domain_id7mtqB01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily2300 — Response regulator

8. Citations (1)

9. Files and Curves (10)