7ueb

Photosynthetic assembly of Chlorobaculum tepidum (RC-FMO2)

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Photosystem P840 reaction center, large subunit

OrganismNot specified

UniProt Q8KAY0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) Cytochrome c × 2 (O07091) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscE × 1 (Q8KDI3) PscF × 1 (Q8KG87) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8KAY0_CHLTE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–731; UniProt 1–731 Author chain a; PDBConstruct 1–731; UniProt 1–731

Photosystem P840 reaction center iron-sulfur protein

OrganismNot specified

UniProt Q8KAY1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Cytochrome c × 2 (O07091) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscE × 1 (Q8KDI3) PscF × 1 (Q8KG87) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8KAY1_CHLTE
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–231; UniProt 1–231

Cytochrome c

OrganismNot specified

UniProt O07091

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscE × 1 (Q8KDI3) PscF × 1 (Q8KG87) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CY551_CHLTE
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–206; UniProt 1–206 Author chain c; PDBConstruct 1–206; UniProt 1–206

P840 reaction center 17 kDa protein

OrganismNot specified

UniProt Q8KEP5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) Cytochrome c × 2 (O07091) PscE × 1 (Q8KDI3) PscF × 1 (Q8KG87) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSCD_CHLTE
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–143; UniProt 1–143

PscE

OrganismNot specified

UniProt Q8KDI3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) Cytochrome c × 2 (O07091) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscF × 1 (Q8KG87) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8KDI3_CHLTE
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–59; UniProt 1–59

PscF

OrganismNot specified

UniProt Q8KG87

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) Cytochrome c × 2 (O07091) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscE × 1 (Q8KDI3) Bacteriochlorophyll a protein × 6 (Q46393) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8KG87_CHLTE
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–58; UniProt 1–58

Bacteriochlorophyll a protein

OrganismNot specified

UniProt Q46393

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 14 Photosystem P840 reaction center, large subunit × 2 (Q8KAY0) Photosystem P840 reaction center iron-sulfur protein × 1 (Q8KAY1) Cytochrome c × 2 (O07091) P840 reaction center 17 kDa protein × 1 (Q8KEP5) PscE × 1 (Q8KDI3) PscF × 1 (Q8KG87) Bacteriochlorophyll A isomer × 2 Chlorophyll A ester × 4 BACTERIOCHLOROPHYLL A × 73 ;[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate ; × 3 ;2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene ; × 3 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 10 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BCPA_CHLTE
Isoform —
PDB entities 7
Chains and sequence ranges Author chain U; PDBConstruct 1–366; UniProt 1–366 Author chain V; PDBConstruct 1–366; UniProt 1–366 Author chain W; PDBConstruct 1–366; UniProt 1–366 Author chain X; PDBConstruct 1–366; UniProt 1–366 Author chain Y; PDBConstruct 1–366; UniProt 1–366 Author chain Z; PDBConstruct 1–366; UniProt 1–366

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id7ueb
Deposition date deposition_date2022-03-21
Structure title titlePhotosynthetic assembly of Chlorobaculum tepidum (RC-FMO2)
Keywords keywordsFMO, reaction center, single-particle cryo-EM, bacteriochlorophyll, photosynthesis, electron transport chain, energy transfer; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7ueb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7ueb__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7ueb__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)54.92 Å
Rg (electron density)54.27 Å
Total Rg54.23 Å
Atom count37294
Residues4006
Excluded volume684670 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7ueb__assembly_1__model_1 tetradecameric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (16)

▶

7. Citations (1)