7uzj

Rat Kidney V1 complex with SidK and NCOA7B, State 1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATPase H+-transporting V1 subunit A

OrganismNot specified

UniProt D4A133

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name D4A133_RAT
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–617; UniProt 1–617 Author chain B; PDBConstruct 1–617; UniProt 1–617 Author chain C; PDBConstruct 1–617; UniProt 1–617

V-type proton ATPase subunit B, brain isoform

OrganismNot specified

UniProt P62815

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VATB2_RAT
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–511; UniProt 1–511 Author chain E; PDBConstruct 1–511; UniProt 1–511 Author chain F; PDBConstruct 1–511; UniProt 1–511

V-type proton ATPase subunit C 1

OrganismNot specified

UniProt Q5FVI6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VATC1_RAT
Isoform —
PDB entities 3
Chains and sequence ranges Author chain G; PDBConstruct 1–382; UniProt 1–382

ATPase H+-transporting V1 subunit D

OrganismNot specified

UniProt Q6P503

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q6P503_RAT
Isoform —
PDB entities 4
Chains and sequence ranges Author chain H; PDBConstruct 1–247; UniProt 1–247

V-type proton ATPase subunit E 1

OrganismNot specified

UniProt Q6PCU2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VATE1_RAT
Isoform —
PDB entities 5
Chains and sequence ranges Author chain I; PDBConstruct 1–226; UniProt 1–226 Author chain J; PDBConstruct 1–226; UniProt 1–226 Author chain K; PDBConstruct 1–226; UniProt 1–226

V-type proton ATPase subunit F

OrganismNot specified

UniProt P50408

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VATF_RAT
Isoform —
PDB entities 6
Chains and sequence ranges Author chain L; PDBConstruct 1–119; UniProt 1–119

V-type proton ATPase subunit G

OrganismNot specified

UniProt B2GUV5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name B2GUV5_RAT
Isoform —
PDB entities 7
Chains and sequence ranges Author chain M; PDBConstruct 1–118; UniProt 1–118 Author chain N; PDBConstruct 1–118; UniProt 1–118 Author chain O; PDBConstruct 1–118; UniProt 1–118

V-type proton ATPase subunit H

OrganismNot specified

UniProt A0A0G2K9J2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) Effector SidK × 3 (Q5ZWW6) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0G2K9J2_RAT
Isoform —
PDB entities 8
Chains and sequence ranges Author chain P; PDBConstruct 1–483; UniProt 1–483

Effector SidK

Legionella pneumophila

UniProt Q5ZWW6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 20 ATPase H+-transporting V1 subunit A × 3 (D4A133) V-type proton ATPase subunit B, brain isoform × 3 (P62815) V-type proton ATPase subunit C 1 × 1 (Q5FVI6) ATPase H+-transporting V1 subunit D × 1 (Q6P503) V-type proton ATPase subunit E 1 × 3 (Q6PCU2) V-type proton ATPase subunit F × 1 (P50408) V-type proton ATPase subunit G × 3 (B2GUV5) V-type proton ATPase subunit H × 1 (A0A0G2K9J2) Nuclear receptor coactivator 7B × 1 ADENOSINE-5'-DIPHOSPHATE × 1 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q5ZWW6_LEGPH
Isoform —
PDB entities 9
Chains and sequence ranges Author chain Q; PDBConstruct 1–280; UniProt 1–280 Author chain R; PDBConstruct 1–280; UniProt 1–280 Author chain S; PDBConstruct 1–280; UniProt 1–280

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7uzj
Deposition date deposition_date2022-05-09
Last revision last_revision2023-11-22
Structure title titleRat Kidney V1 complex with SidK and NCOA7B, State 1
Keywords keywordsV-ATPase, Complex, Membrane protein, PROTON TRANSPORT; PROTON TRANSPORT
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7uzj__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7uzj__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7uzj__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)62.85 Å
Rg (electron density)62.37 Å
Total Rg62.56 Å
Atom count49624
Residues6232
Excluded volume887230 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7uzj__assembly_1__model_1 eicosameric (20) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (12)

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7. Citations (1)