7znl

Structure of the human TREX core THO-UAP56 complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

THO complex subunit 1

Homo sapiens

UniProt Q96FV9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 6 homolog × 4 (Q86W42) THO complex subunit 7 homolog × 4 (Q6I9Y2) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–657; UniProt 1–657 Author chain I; PDBConstruct 1–657; UniProt 1–657 Author chain a; PDBConstruct 1–657; UniProt 1–657 Author chain i; PDBConstruct 1–657; UniProt 1–657

THO complex subunit 2

Homo sapiens

UniProt Q8NI27

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 6 homolog × 4 (Q86W42) THO complex subunit 7 homolog × 4 (Q6I9Y2) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC2_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1593; UniProt 1–1593 Author chain J; PDBConstruct 1–1593; UniProt 1–1593 Author chain b; PDBConstruct 1–1593; UniProt 1–1593 Author chain j; PDBConstruct 1–1593; UniProt 1–1593

THO complex subunit 3

Homo sapiens

UniProt Q96J01

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 6 homolog × 4 (Q86W42) THO complex subunit 7 homolog × 4 (Q6I9Y2) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–351; UniProt 1–351 Author chain K; PDBConstruct 1–351; UniProt 1–351 Author chain c; PDBConstruct 1–351; UniProt 1–351 Author chain k; PDBConstruct 1–351; UniProt 1–351

THO complex subunit 5 homolog

Homo sapiens

UniProt Q13769

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 6 homolog × 4 (Q86W42) THO complex subunit 7 homolog × 4 (Q6I9Y2) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC5_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–683; UniProt 1–683 Author chain M; PDBConstruct 1–683; UniProt 1–683 Author chain e; PDBConstruct 1–683; UniProt 1–683 Author chain m; PDBConstruct 1–683; UniProt 1–683

THO complex subunit 6 homolog

Homo sapiens

UniProt Q86W42

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 7 homolog × 4 (Q6I9Y2) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC6_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain F; PDBConstruct 1–341; UniProt 1–341 Author chain N; PDBConstruct 1–341; UniProt 1–341 Author chain f; PDBConstruct 1–341; UniProt 1–341 Author chain n; PDBConstruct 1–341; UniProt 1–341

THO complex subunit 7 homolog

Homo sapiens

UniProt Q6I9Y2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 6 homolog × 4 (Q86W42) Spliceosome RNA helicase DDX39B × 4 (Q13838) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name THOC7_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain G; PDBConstruct 1–204; UniProt 1–204 Author chain O; PDBConstruct 1–204; UniProt 1–204 Author chain g; PDBConstruct 1–204; UniProt 1–204 Author chain o; PDBConstruct 1–204; UniProt 1–204

Spliceosome RNA helicase DDX39B

Homo sapiens

UniProt Q13838

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 28 THO complex subunit 1 × 4 (Q96FV9) THO complex subunit 2 × 4 (Q8NI27) THO complex subunit 3 × 4 (Q96J01) THO complex subunit 5 homolog × 4 (Q13769) THO complex subunit 6 homolog × 4 (Q86W42) THO complex subunit 7 homolog × 4 (Q6I9Y2) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DX39B_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain H; PDBConstruct 1–428; UniProt 1–428 Author chain P; PDBConstruct 1–428; UniProt 1–428 Author chain h; PDBConstruct 1–428; UniProt 1–428 Author chain p; PDBConstruct 1–428; UniProt 1–428

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7znl
Deposition date deposition_date2022-04-21
Structure title titleStructure of the human TREX core THO-UAP56 complex
Keywords keywordstranscription and export complex, TREX, RNA export, RNA packaging, RNA binding protein, gene expression, GENE REGULATION; GENE REGULATION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7znl__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7znl__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7znl__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)118.20 Å
Total Rg117.70 Å
Atom count84821
Residues11173
Excluded volume1504600 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7znl__assembly_1__model_1 28-meric (28) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

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6. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id7znlF01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id7znlN01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id7znlf01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id7znln01
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
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7. Citations (1)