8du3

Crystal structure of A2AAR-StaR2-bRIL in complex with compound 21a

Method: X-RAY DIFFRACTION Dmax: 106.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Adenosine receptor A2a, soluble cytochrome b562 chimera,Soluble cytochrome b562,Adenosine receptor A2a

Homo sapiens

UniProt P0ABE7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 23–128 Mutation:A79L, T113A, R132A, K147A, N179A, L227A, M240W, H335I, R339L, L356A, V360A, S398A TKO (4M)-6-bromo-4-(furan-2-yl)quinazolin-2-amine × 1 CLR CHOLESTEROL × 3 OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 4 OLA OLEIC ACID × 17 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;pH 4.5;293 K;Sodium Citrate pH 4.5, sodium thiocyanate, PEG 400, 2,4-hexanediol Resolution 2.50 Å R-free 0.232

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

714 other PDB entries and 822 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C562_ECOLX
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 234–339; UniProt 23–128

Adenosine receptor A2a, soluble cytochrome b562 chimera,Soluble cytochrome b562,Adenosine receptor A2a

Homo sapiens

UniProt P29274

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 2–208 Chain A; UniProt 219–316 Mutation:A79L, T113A, R132A, K147A, N179A, L227A, M240W, H335I, R339L, L356A, V360A, S398A TKO (4M)-6-bromo-4-(furan-2-yl)quinazolin-2-amine × 1 CLR CHOLESTEROL × 3 OLC (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 4 OLA OLEIC ACID × 17 X-RAY DIFFRACTION X-ray crystallization conditions:LIPIDIC CUBIC PHASE;pH 4.5;293 K;Sodium Citrate pH 4.5, sodium thiocyanate, PEG 400, 2,4-hexanediol Resolution 2.50 Å R-free 0.232

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

185 other PDB entries and 189 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AA2AR_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 27–233; UniProt 2–208 Author chain A; PDBConstruct 340–437; UniProt 219–316

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8du3

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8du3
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8du3
Deposition date deposition_date2022-07-26
Structure title titleCrystal structure of A2AAR-StaR2-bRIL in complex with compound 21a
Keywords keywordsGPCR, LCP, Antagonists, Alzheimer, Parkinson, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier30.55
Radius of gyration Rg (electron density) rg_electron29.44
Forward intensity I(0) i027450800.00
Molecular weight molecular_weight48504.0 kDa
Excluded volume excluded_volume64201 ų
Envelope volume envelope_volume77330 ų
Hydration-shell volume shell_volume24878 ų
Envelope diameter envelope_diameter112.4
Shell Rg shell_rg32.41
Envelope Rg envelope_rg29.74
Shape Rg shape_rg29.41
Total Rg total_rg29.89
Total atoms total_atoms3415
Residues n_residues390
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax106.6
Rg (real space) rg_real31.08
Rg uncertainty (real space) rg_real_error1.35
I(0) (real space) i0_real2.7450e+07
I(0) uncertainty (real space) i0_real_error4.8580e+05
Rg (reciprocal space) rg_reciprocal30.85
I(0) (reciprocal space) i0_reciprocal27450000.0000
Solution quality estimate total_estimate0.7319
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary22.5
Skewness Skewness skewness0.634
Kurtosis Kurtosis kurtosis-0.274
Angular range angular_range— – 0.2600 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3516000.0000
Real-space data points n_real_points53
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.597; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.317; Smooth: 0.402

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)