8dy5

Crystal Structure of spFv CAT2200 LH in complex with IL-17A

Method: X-RAY DIFFRACTION Dmax: 115.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Interleukin-17A

Homo sapiens

UniProt Q16552

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 35–155 Mutation:K93Q, C129S, A155Q spFv CAT2200 LH × 1 CL CHLORIDE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;298 K;400 mM LiSO4, 15.5% PEG 3350 Resolution 2.20 Å R-free 0.232
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 35–155 Mutation:K93Q, C129S, A155Q spFv CAT2200 LH × 1 CA CALCIUM ION × 1 MG MAGNESIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;298 K;400 mM LiSO4, 15.5% PEG 3350 Resolution 2.20 Å R-free 0.232

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

43 other PDB entries and 55 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IL17_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 2–122; UniProt 35–155 Author chain D; PDBConstruct 2–122; UniProt 35–155

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8dy5

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8dy5
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8dy5
Deposition date deposition_date2022-08-03
Structure title titleCrystal Structure of spFv CAT2200 LH in complex with IL-17A
Keywords keywordsscFv, stapled scFv, spFv, germline scFv, single chain Fv, scFv stabilizations, antibody, IMMUNE SYSTEM, antibody antigen complex; IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier36.36
Radius of gyration Rg (electron density) rg_electron36.04
Forward intensity I(0) i088117700.00
Molecular weight molecular_weight71550.0 kDa
Excluded volume excluded_volume87927 ų
Envelope volume envelope_volume132140 ų
Hydration-shell volume shell_volume31134 ų
Envelope diameter envelope_diameter122.9
Shell Rg shell_rg41.58
Envelope Rg envelope_rg35.34
Shape Rg shape_rg36.03
Total Rg total_rg36.47
Total atoms total_atoms5024
Residues n_residues691
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax115.8
Rg (real space) rg_real36.43
Rg uncertainty (real space) rg_real_error1.06
I(0) (real space) i0_real8.8120e+07
I(0) uncertainty (real space) i0_real_error1.5580e+06
Rg (reciprocal space) rg_reciprocal36.39
I(0) (reciprocal space) i0_reciprocal88110000.0000
Solution quality estimate total_estimate0.8455
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary57.9
Skewness Skewness skewness0.193
Kurtosis Kurtosis kurtosis-0.768
Angular range angular_range— – 0.2200 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8306000.0000
Real-space data points n_real_points45
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.830; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.835; Smooth: 0.663

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id8dy5A01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8dy5A02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8dy5B01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id8dy5B02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)