8cdg

Crystal structure of human IL-17A cytokine in complex with macrocycle

Method: X-RAY DIFFRACTION Dmax: 66.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Interleukin-17A

Homo sapiens

UniProt Q16552

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 34–155 Chain B; UniProt 34–155 Not recorded UTF (9~{S},12~{R},19~{S})-9-[[4-[[(2~{S})-2-cyclohexyl-2-(2-phenylethanoylamino)ethanoyl]amino]phenyl]methyl]-12-methyl-7,10,13,21-tetrakis(oxidanylidene)-8,11,14,20-tetrazaspiro[4.17]docosane-19-carboxylic acid × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;291 K;100 mM sodium citrate buffer, pH 5.5, 8 % 2-propanol, and 10 % w/v PEG10k Resolution 2.90 Å R-free 0.257

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

43 other PDB entries and 56 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IL17_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–124; UniProt 34–155 Author chain B; PDBConstruct 3–124; UniProt 34–155

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8cdg

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8cdg
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id8cdg
Deposition date deposition_date2023-01-30
Structure title titleCrystal structure of human IL-17A cytokine in complex with macrocycle
Keywords keywordsinhibitor, complex, cytokine, macrocycle; CYTOKINE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.46
Radius of gyration Rg (electron density) rg_electron19.40
Forward intensity I(0) i09765800.00
Molecular weight molecular_weight22617.0 kDa
Excluded volume excluded_volume28096 ų
Envelope volume envelope_volume34518 ų
Hydration-shell volume shell_volume15878 ų
Envelope diameter envelope_diameter64.6
Shell Rg shell_rg24.24
Envelope Rg envelope_rg19.45
Shape Rg shape_rg19.39
Total Rg total_rg20.17
Total atoms total_atoms1589
Residues n_residues189
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax66.0
Rg (real space) rg_real20.53
Rg uncertainty (real space) rg_real_error0.47
I(0) (real space) i0_real9.7660e+06
I(0) uncertainty (real space) i0_real_error1.1760e+05
Rg (reciprocal space) rg_reciprocal20.52
I(0) (reciprocal space) i0_reciprocal9766000.0000
Solution quality estimate total_estimate0.8919
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.8
Skewness Skewness skewness0.376
Kurtosis Kurtosis kurtosis-0.494
Angular range angular_range— – 0.3900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1359000.0000
Real-space data points n_real_points71
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.902; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.937

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)