8gbt

Time-resolve SFX structure of a photoproduct of carbon monoxide complex of bovine cytochrome c oxidase

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Cytochrome c oxidase subunit 1

物种未注明

UniProt P00396

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX1_BOVIN
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–514; UniProt 1–514 作者链 N; PDB构建体 1–514; UniProt 1–514

Cytochrome c oxidase subunit 2

物种未注明

UniProt P68530

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX2_BOVIN
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–227; UniProt 1–227 作者链 O; PDB构建体 1–227; UniProt 1–227

Cytochrome c oxidase subunit 3

物种未注明

UniProt P00415

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX3_BOVIN
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–261; UniProt 1–261 作者链 P; PDB构建体 1–261; UniProt 1–261

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial

物种未注明

UniProt P00423

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX41_BOVIN
Isoform —
PDB实体 4
链与序列区间 作者链 D; PDB构建体 1–147; UniProt 23–169 作者链 Q; PDB构建体 1–147; UniProt 23–169

Cytochrome c oxidase subunit 5A, mitochondrial

物种未注明

UniProt P00426

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX5A_BOVIN
Isoform —
PDB实体 5
链与序列区间 作者链 E; PDB构建体 1–109; UniProt 44–152 作者链 R; PDB构建体 1–109; UniProt 44–152

Cytochrome c oxidase subunit 5B, mitochondrial

物种未注明

UniProt P00428

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX5B_BOVIN
Isoform —
PDB实体 6
链与序列区间 作者链 F; PDB构建体 1–98; UniProt 32–129 作者链 S; PDB构建体 1–98; UniProt 32–129

Cytochrome c oxidase subunit 6A2, mitochondrial

物种未注明

UniProt P07471

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CX6A2_BOVIN
Isoform —
PDB实体 7
链与序列区间 作者链 G; PDB构建体 1–85; UniProt 13–97 作者链 T; PDB构建体 1–85; UniProt 13–97

Cytochrome c oxidase subunit 6B1

物种未注明

UniProt P00429

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CX6B1_BOVIN
Isoform —
PDB实体 8
链与序列区间 作者链 H; PDB构建体 1–85; UniProt 2–86 作者链 U; PDB构建体 1–85; UniProt 2–86

Cytochrome c oxidase subunit 6C

物种未注明

UniProt P04038

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX6C_BOVIN
Isoform —
PDB实体 9
链与序列区间 作者链 I; PDB构建体 1–73; UniProt 2–74 作者链 V; PDB构建体 1–73; UniProt 2–74

Cytochrome c oxidase subunit 7A1, mitochondrial

物种未注明

UniProt P07470

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 CX7A1_BOVIN
Isoform —
PDB实体 10
链与序列区间 作者链 J; PDB构建体 1–59; UniProt 22–80 作者链 W; PDB构建体 1–59; UniProt 22–80

Cytochrome c oxidase subunit 7B, mitochondrial

物种未注明

UniProt P13183

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX7B_BOVIN
Isoform —
PDB实体 11
链与序列区间 作者链 K; PDB构建体 1–56; UniProt 25–80 作者链 X; PDB构建体 1–56; UniProt 25–80

Cytochrome c oxidase subunit 7C, mitochondrial

物种未注明

UniProt P00430

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 8B, mitochondrial × 2 (P10175) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX7C_BOVIN
Isoform —
PDB实体 12
链与序列区间 作者链 L; PDB构建体 1–47; UniProt 17–63 作者链 Y; PDB构建体 1–47; UniProt 17–63

Cytochrome c oxidase subunit 8B, mitochondrial

物种未注明

UniProt P10175

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 26 Cytochrome c oxidase subunit 1 × 2 (P00396) Cytochrome c oxidase subunit 2 × 2 (P68530) Cytochrome c oxidase subunit 3 × 2 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 2 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 2 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 2 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 2 (P07471) Cytochrome c oxidase subunit 6B1 × 2 (P00429) Cytochrome c oxidase subunit 6C × 2 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 2 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 2 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 2 (P00430) HEME-A × 4 COPPER (II) ION × 2 MAGNESIUM ION × 2 SODIUM ION × 2 TRISTEAROYLGLYCEROL × 6 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 8 CARBON MONOXIDE × 2 DINUCLEAR COPPER ION × 2 CHOLIC ACID × 8 HYDROXIDE ION × 2 CARDIOLIPIN × 4 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 2 ZINC ION × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 6 DECYL-BETA-D-MALTOPYRANOSIDE × 4 N-ACETYL-SERINE × 2 water × 24 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 COX8B_BOVIN
Isoform —
PDB实体 13
链与序列区间 作者链 M; PDB构建体 1–46; UniProt 25–70 作者链 Z; PDB构建体 1–46; UniProt 25–70

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id8gbt
沉积日期 deposition_date2023-02-28
结构标题 titleTime-resolve SFX structure of a photoproduct of carbon monoxide complex of bovine cytochrome c oxidase
关键词 keywords;Oxidative phosphorylation, Electron transfer chain, Bioenergetics, Cytochrome c oxidase, Serial femtosecond X-ray crystallography, MEMBRANE PROTEIN ;; MEMBRANE PROTEIN
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

8gbt__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

8gbt__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

8gbt__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)50.85 Å
Rg(电子密度)49.99 Å
总 Rg50.22 Å
原子数30734
残基数3550
排除体积563560 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 8gbt__assembly_1__model_1 26-meric (26) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (30)

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7. 引用文献 (1)