8rxl

TEAD2 with an inhibitor

Method: X-RAY DIFFRACTION Dmax: 72.7 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcriptional enhancer factor TEF-4

Homo sapiens

UniProt Q15562

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 216–447 Not recorded A1H3Z 4-(5-phenylmethoxy-1~{H}-indol-3-yl)butan-2-one × 1 GOL GLYCEROL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;291 K;2.8M sodium formate Resolution 2.29 Å R-free 0.271
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 216–447 Not recorded A1H3Z 4-(5-phenylmethoxy-1~{H}-indol-3-yl)butan-2-one × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;291 K;2.8M sodium formate Resolution 2.29 Å R-free 0.271

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

41 other PDB entries and 78 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TEAD2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–232; UniProt 216–447 Author chain B; PDBConstruct 1–232; UniProt 216–447

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8rxl

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8rxl
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8rxl
Deposition date deposition_date2024-02-07
最后修订 last_revision2025-02-19
Structure title titleTEAD2 with an inhibitor
Keywords keywordsinhibitor, complex, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.45
Radius of gyration Rg (electron density) rg_electron22.48
Forward intensity I(0) i070656300.00
Molecular weight molecular_weight44320.0 kDa
Excluded volume excluded_volume43155 ų
Envelope volume envelope_volume72392 ų
Hydration-shell volume shell_volume26489 ų
Envelope diameter envelope_diameter74.7
Shell Rg shell_rg29.70
Envelope Rg envelope_rg22.65
Shape Rg shape_rg22.46
Total Rg total_rg23.16
Total atoms total_atoms3367
Residues n_residues404
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax72.7
Rg (real space) rg_real23.33
Rg uncertainty (real space) rg_real_error0.35
I(0) (real space) i0_real7.0660e+07
I(0) uncertainty (real space) i0_real_error8.0500e+05
Rg (reciprocal space) rg_reciprocal23.36
I(0) (reciprocal space) i0_reciprocal70660000.0000
Solution quality estimate total_estimate0.9051
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary29.1
Skewness Skewness skewness0.192
Kurtosis Kurtosis kurtosis-0.467
Angular range angular_range— – 0.3400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha10100000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.931; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.975

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)