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8too

Crystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Glycoprotein 42

Epstein-Barr virus

UniProt P03205

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 4C12 light chain × 1 4C12 heavy chain × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 4C12 light chain × 1 4C12 heavy chain × 1 water × 3 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 4C12 light chain × 1 4C12 heavy chain × 1 water × 3 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 4C12 light chain × 1 4C12 heavy chain × 1 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
3fd4 3fd4

2 assemblies

Homodimer
3fd4

1 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1kg0 5w0k 5w0k 8tnn 8tnn 8tnt 8too 8too 8too 8too

10 assemblies

View Construct and Data Evidence
UniProt name GP42_EBVB9
Isoform —
PDB entities 3
Chains and sequence ranges Author chain I； PDBConstruct 1–139； UniProt 85–223 Author chain J； PDBConstruct 1–139； UniProt 85–223 Author chain K； PDBConstruct 1–139； UniProt 85–223 Author chain L； PDBConstruct 1–139； UniProt 85–223

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8too
Deposition date deposition_date2023-08-03
Structure title titleCrystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12
Keywords keywordsViral Protein, Antibody, IMMUNE SYSTEM; IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8too__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8too__assembly_2__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8too__assembly_2__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）30.18 Å
Rg (electron density)29.98 Å
Total Rg30.48 Å
Atom count4230
Residues567
Excluded volume74437 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8too__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 8too__assembly_2__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 8too__assembly_3__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 8too__assembly_4__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)