8x9z

P-hexon capsomer of the VZV C-Capsid

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Major capsid protein

Human alphaherpesvirus 3

UniProt P09245

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Small capsomere-interacting protein × 6 (U5NQG6) CVC1 × 1 Capsid vertex component 2 × 1 (P10209) Capsid vertex component 2 × 1 (P10209) Large tegument protein deneddylase × 2 (P10220) Tri2A × 2 Tri2A × 2 Tri1 × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MCP_VZVD
Isoform —
PDB entities 1, 2, 3
Chains and sequence ranges Author chain A; PDBConstruct 1–1369; UniProt 26–1394 Author chain F; PDBConstruct 1–1369; UniProt 26–1394 Author chain G; PDBConstruct 1–1369; UniProt 26–1394 Author chain H; PDBConstruct 1–1369; UniProt 26–1394 Author chain I; PDBConstruct 1–1369; UniProt 26–1394 Author chain E; PDBConstruct 1–1370; UniProt 25–1394 Author chain J; PDBConstruct 1–1371; UniProt 24–1394

Small capsomere-interacting protein

Human alphaherpesvirus 3

UniProt U5NQG6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Major capsid protein × 5 (P09245) Major capsid protein × 1 (P09245) Major capsid protein × 1 (P09245) CVC1 × 1 Capsid vertex component 2 × 1 (P10209) Capsid vertex component 2 × 1 (P10209) Large tegument protein deneddylase × 2 (P10220) Tri2A × 2 Tri2A × 2 Tri1 × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name U5NQG6_HHV3
Isoform —
PDB entities 4
Chains and sequence ranges Author chain L; PDBConstruct 1–94; UniProt 14–107 Author chain R; PDBConstruct 1–94; UniProt 14–107 Author chain X; PDBConstruct 1–94; UniProt 14–107 Author chain d; PDBConstruct 1–94; UniProt 14–107 Author chain e; PDBConstruct 1–94; UniProt 14–107 Author chain f; PDBConstruct 1–94; UniProt 14–107

Capsid vertex component 2

Human alphaherpesvirus 3

UniProt P10209

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Major capsid protein × 5 (P09245) Major capsid protein × 1 (P09245) Major capsid protein × 1 (P09245) Small capsomere-interacting protein × 6 (U5NQG6) CVC1 × 1 Large tegument protein deneddylase × 2 (P10220) Tri2A × 2 Tri2A × 2 Tri1 × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CVC2_HHV11
Isoform —
PDB entities 6, 7
Chains and sequence ranges Author chain l; PDBConstruct 1–94; UniProt 1–94 Author chain m; PDBConstruct 1–80; UniProt 13–92

Large tegument protein deneddylase

Human alphaherpesvirus 3

UniProt P10220

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Major capsid protein × 5 (P09245) Major capsid protein × 1 (P09245) Major capsid protein × 1 (P09245) Small capsomere-interacting protein × 6 (U5NQG6) CVC1 × 1 Capsid vertex component 2 × 1 (P10209) Capsid vertex component 2 × 1 (P10209) Tri2A × 2 Tri2A × 2 Tri1 × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LTP_HHV11
Isoform —
PDB entities 8
Chains and sequence ranges Author chain n; PDBConstruct 1–47; UniProt 3117–3163 Author chain o; PDBConstruct 1–47; UniProt 3117–3163

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8x9z
Deposition date deposition_date2023-12-01
Last revision last_revision2025-11-19
Structure title titleP-hexon capsomer of the VZV C-Capsid
Keywords keywordsVZV, capsid structure, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8x9z__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8x9z__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8x9z__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)77.92 Å
Rg (electron density)77.73 Å
Total Rg77.82 Å
Atom count93092
Residues12077
Excluded volume1654400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8x9z__assembly_1__model_1 24-meric (24) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (1)