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8yw1

Semliki Forest virus viron in complex with VLDLR

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Spike glycoprotein E1

OrganismNot specified

UniProt A0A0E3T652

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 33 其他Polymer 24 Very low-density lipoprotein receptor × 1 （P98155） beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 24 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
8ua8 8x0k 8x0l 8x0m 8yvy 8yvz 8yw0 8yw1 8yw2

9 assemblies

View Construct and Data Evidence
UniProt name A0A0E3T652_SFV
Isoform —
PDB entities 1, 2, 4, 5
Chains and sequence ranges Author chain A； PDBConstruct 1–438； UniProt 816–1253 Author chain E； PDBConstruct 1–438； UniProt 816–1253 Author chain F； PDBConstruct 1–438； UniProt 816–1253 Author chain G； PDBConstruct 1–438； UniProt 816–1253 Author chain H； PDBConstruct 1–438； UniProt 816–1253 Author chain U； PDBConstruct 1–438； UniProt 816–1253 Author chain V； PDBConstruct 1–438； UniProt 816–1253 Author chain W； PDBConstruct 1–438； UniProt 816–1253 Author chain B； PDBConstruct 1–418； UniProt 338–755 Author chain I； PDBConstruct 1–418； UniProt 338–755 Author chain J； PDBConstruct 1–418； UniProt 338–755 Author chain K； PDBConstruct 1–418； UniProt 338–755 Author chain R； PDBConstruct 1–418； UniProt 338–755 Author chain X； PDBConstruct 1–418； UniProt 338–755 Author chain Y； PDBConstruct 1–418； UniProt 338–755 Author chain Z； PDBConstruct 1–418； UniProt 338–755 Author chain D； PDBConstruct 1–161； UniProt 107–267 Author chain O； PDBConstruct 1–161； UniProt 107–267 Author chain P； PDBConstruct 1–161； UniProt 107–267 Author chain Q； PDBConstruct 1–161； UniProt 107–267 Author chain T； PDBConstruct 1–161； UniProt 107–267 Author chain d； PDBConstruct 1–161； UniProt 107–267 Author chain e； PDBConstruct 1–161； UniProt 107–267 Author chain f； PDBConstruct 1–161； UniProt 107–267 Author chain L； PDBConstruct 1–52； UniProt 275–326 Author chain M； PDBConstruct 1–52； UniProt 275–326 Author chain N； PDBConstruct 1–52； UniProt 275–326 Author chain S； PDBConstruct 1–52； UniProt 275–326 Author chain a； PDBConstruct 1–52； UniProt 275–326 Author chain b； PDBConstruct 1–52； UniProt 275–326 Author chain c； PDBConstruct 1–52； UniProt 275–326 Author chain g； PDBConstruct 1–52； UniProt 275–326

Very low-density lipoprotein receptor

Homo sapiens

UniProt P98155

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 33 其他Polymer 24 Spike glycoprotein E1 × 8 （A0A0E3T652） Spike glycoprotein E2 × 8 （A0A0E3T652） capsid protein, partial × 8 （A0A0E3T652） Spike glycoprotein E3 × 8 （A0A0E3T652） beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 24 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
6byv

1 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1v9u 1v9u 1v9u 1v9u 1v9u 1v9u 3dpr 3dpr 3dpr 3dpr 3dpr 3dpr

35 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name VLDLR_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C； PDBConstruct 1–121； UniProt 111–231

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8yw1
Deposition date deposition_date2024-03-29
Structure title titleSemliki Forest virus viron in complex with VLDLR
Keywords keywordsSemliki Forest virus, VLDLR, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8yw1__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8yw1__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8yw1__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）94.34 Å
Rg (electron density)94.17 Å
Total Rg94.30 Å
Atom count67744
Residues8673
Excluded volume1200500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8yw1__assembly_1__model_1 33-meric （33） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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7. Citations (1)