9c1w

Structure of AKT2 with compound 3

Method: X-RAY DIFFRACTION Dmax: 69.7 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

RAC-beta serine/threonine-protein kinase

Homo sapiens

UniProt P31751

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 2–447 Mutation:P115A, G116A XOO 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde × 1 EDO 1,2-ETHANEDIOL × 6 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;0.1 M HEPES pH 7.5, 20 % w/v PEG 8000 Resolution 2.00 Å R-free 0.242

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

18 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name AKT2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–446; UniProt 2–447

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9c1w

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9c1w
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id9c1w
Deposition date deposition_date2024-05-29
Structure title titleStructure of AKT2 with compound 3
Keywords keywordsInhibitor, Kinase, TRANSFERASE, TRANSFERASE-INHIBITOR complex; TRANSFERASE/INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.04
Radius of gyration Rg (electron density) rg_electron21.75
Forward intensity I(0) i034123800.00
Molecular weight molecular_weight46152.0 kDa
Excluded volume excluded_volume58296 ų
Envelope volume envelope_volume69222 ų
Hydration-shell volume shell_volume26038 ų
Envelope diameter envelope_diameter71.5
Shell Rg shell_rg28.81
Envelope Rg envelope_rg21.82
Shape Rg shape_rg21.73
Total Rg total_rg22.71
Total atoms total_atoms3320
Residues n_residues388
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax69.7
Rg (real space) rg_real22.90
Rg uncertainty (real space) rg_real_error0.33
I(0) (real space) i0_real3.4120e+07
I(0) uncertainty (real space) i0_real_error4.2850e+05
Rg (reciprocal space) rg_reciprocal22.94
I(0) (reciprocal space) i0_reciprocal34120000.0000
Solution quality estimate total_estimate0.9107
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary68.6
Skewness Skewness skewness0.137
Kurtosis Kurtosis kurtosis-0.550
Angular range angular_range— – 0.3450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha9745000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.956; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.977

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)