9cl9

WT 12C IM fraction, B-b3 with RluB bound

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Large ribosomal subunit protein bL20

OrganismNot specified

UniProt P0A7L3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL20_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain Q; PDBConstruct 1–117; UniProt 2–118

Large ribosomal subunit protein bL21

OrganismNot specified

UniProt P0AG48

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL21_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain R; PDBConstruct 1–103; UniProt 1–103

Large ribosomal subunit protein uL23

OrganismNot specified

UniProt P0ADZ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL23_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain T; PDBConstruct 1–90; UniProt 4–93

Large ribosomal subunit protein bL34

OrganismNot specified

UniProt P0A7P5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL34_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 2; PDBConstruct 1–37; UniProt 9–45

Ribosomal large subunit pseudouridine synthase B

OrganismNot specified

UniProt P37765

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RLUB_ECOLI
Isoform —
PDB entities 5
Chains and sequence ranges Author chain A; PDBConstruct 1–283; UniProt 1–283

Large ribosomal subunit protein uL3

OrganismNot specified

UniProt P60438

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL3_ECOLI
Isoform —
PDB entities 7
Chains and sequence ranges Author chain D; PDBConstruct 1–209; UniProt 1–209

Large ribosomal subunit protein uL4

OrganismNot specified

UniProt P60723

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL4_ECOLI
Isoform —
PDB entities 8
Chains and sequence ranges Author chain E; PDBConstruct 1–201; UniProt 1–201

Large ribosomal subunit protein uL13

OrganismNot specified

UniProt P0AA10

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL13_ECOLI
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–142; UniProt 1–142

Large ribosomal subunit protein uL22

OrganismNot specified

UniProt P61175

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL22_ECOLI
Isoform —
PDB entities 10
Chains and sequence ranges Author chain S; PDBConstruct 1–110; UniProt 1–110

Large ribosomal subunit protein uL24

OrganismNot specified

UniProt P60624

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL24_ECOLI
Isoform —
PDB entities 11
Chains and sequence ranges Author chain U; PDBConstruct 1–102; UniProt 2–103

Large ribosomal subunit protein uL29

OrganismNot specified

UniProt P0A7M6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 11 RNA 1 Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein bL34 × 1 (P0A7P5) Ribosomal large subunit pseudouridine synthase B × 1 (P37765) 23S rRNA × 1 Large ribosomal subunit protein uL3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein uL22 × 1 (P61175) Large ribosomal subunit protein uL24 × 1 (P60624) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL29_ECOLI
Isoform —
PDB entities 12
Chains and sequence ranges Author chain Y; PDBConstruct 1–60; UniProt 1–60

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9cl9
Deposition date deposition_date2024-07-10
Last revision last_revision2024-07-24
Structure title titleWT 12C IM fraction, B-b3 with RluB bound
Keywords keywords50S subunit, assembly intermediate, RNA-protein complex, ribosome; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9cl9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9cl9__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9cl9__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)60.86 Å
Rg (electron density)60.60 Å
Total Rg60.74 Å
Atom count56342
Residues2880
Excluded volume541150 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9cl9__assembly_1__model_1 dodecameric (12) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (12)

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7. Citations (1)