2j28

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Method: ELECTRON MICROSCOPY D_max: 265.6 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

▼

1. 结构基本信息 1. Structure Basics

条目编号 entry_id	2j28
沉积日期 deposition_date	2006-08-16
结构标题 title	MODEL OF E. COLI SRP BOUND TO 70S RNCS
关键词 keywords	RIBOSOME, PROTEIN-RNA COMPLEX, SIGNAL RECOGNITION PARTICLE; RIBOSOME
实验方法 method	ELECTRON MICROSCOPY

▼

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	71.51 Å
回转半径 Rg (电子) rg_electron	73.15 Å
零角强度 I(0) i0	65041100000.00
分子量 molecular_weight	1411000.0 kDa
排除体积 excluded_volume	1451200 Å³
包络体积 envelope_volume	2483700 Å³
水化壳体积 shell_volume	261200 Å³
包络直径 envelope_diameter	265.7 Å
壳层 Rg shell_rg	84.62 Å
包络 Rg envelope_rg	73.63 Å
形状 Rg shape_rg	73.24 Å
总 Rg total_rg	73.05 Å
总原子数 total_atoms	94846
残基数 n_residues	6858
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

▼

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	265.6 Å
Rg (实空间) rg_real	74.62 Å
Rg 误差 (实空间) rg_real_error	1.39 Å
I(0) (实空间) i0_real	6.5080e+10
I(0) 误差 (实空间) i0_real_error	1.2100e+09
Rg (倒空间) rg_reciprocal	72.01 Å
I(0) (倒空间) i0_reciprocal	65120000000.0000
解质量估计 total_estimate	0.8728
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	84.5 Å
偏度 Skewness skewness	0.586
峰度 Kurtosis kurtosis	0.437
角度范围 angular_range	— – 0.1100 Å⁻¹
当前正则化参数 α current_alpha	0.9665
最高正则化参数 α highest_alpha	9060000000.0000
实空间数据点数 n_real_points	23
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.636; Stabil: 0.891; Sysdev: 1.000; Positv: 1.000; Valcen: 0.940; Smooth: 0.843

▶

4. 晶体学与实验 4. Crystallography & Experiment

▶

5. 实体与聚合体信息 (36)

Entity 1 polymer

描述 description	50S ribosomal protein L32
分子量 formula_weight	6332.2 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	0
原子数 atom_count	95358

AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 2 polymer

描述 description	50S ribosomal protein L33
分子量 formula_weight	6257.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	1

AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 3 polymer

描述 description	50S ribosomal protein L34
分子量 formula_weight	5397.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	2

MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 4 polymer

描述 description	50S ribosomal protein L35
分子量 formula_weight	7181.8 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	3

PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 5 polymer

描述 description	50S ribosomal protein L36
分子量 formula_weight	4377.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	4

MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 6 polymer

描述 description	SIGNAL SEQUENCE
分子量 formula_weight	2121.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	7

LGFPINFLTLYVTVQHKK

来源 Source

来源生物 organism	Escherichia coli K-12
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 7 polymer

描述 description	4.5S SIGNAL RECOGNITION PARTICLE RNA
分子量 formula_weight	23968.3 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	8

UCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGA

来源 Source

来源生物 organism	Escherichia coli K-12
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 8 polymer

描述 description	Signal recognition particle protein
分子量 formula_weight	47362.2 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	9

FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 9 polymer

描述 description	5S RIBOSOMAL RNA
分子量 formula_weight	37848.6 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	A

GCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGC

来源 Source

来源生物 organism	Escherichia coli K-12
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 10 polymer

描述 description	23S RIBOSOMAL RNA
分子量 formula_weight	941612.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	B

GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU

来源 Source

来源生物 organism	Escherichia coli K-12
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 11 polymer

描述 description	50S ribosomal protein L2
分子量 formula_weight	29248.8 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

VKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRR

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 12 polymer

描述 description	50S ribosomal protein L3
分子量 formula_weight	22277.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 13 polymer

描述 description	50S ribosomal protein L4
分子量 formula_weight	22121.6 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 14 polymer

描述 description	50S ribosomal protein L5
分子量 formula_weight	20202.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 15 polymer

描述 description	50S ribosomal protein L6
分子量 formula_weight	18801.6 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 16 polymer

描述 description	50S ribosomal protein L9
分子量 formula_weight	15789.0 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 17 polymer

描述 description	50S ribosomal protein L11
分子量 formula_weight	14763.2 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 18 polymer

描述 description	50S ribosomal protein L13
分子量 formula_weight	15822.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVL

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 19 polymer

描述 description	50S ribosomal protein L14
分子量 formula_weight	13320.7 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 20 polymer

描述 description	50S ribosomal protein L15
分子量 formula_weight	15008.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 21 polymer

描述 description	50S ribosomal protein L16
分子量 formula_weight	15312.3 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 22 polymer

描述 description	50S ribosomal protein L17
分子量 formula_weight	14393.7 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAAAE

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 23 polymer

描述 description	50S ribosomal protein L18
分子量 formula_weight	12794.7 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 24 polymer

描述 description	50S ribosomal protein L19
分子量 formula_weight	13028.1 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

SNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 25 polymer

描述 description	50S ribosomal protein L20
分子量 formula_weight	13396.8 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 26 polymer

描述 description	50S ribosomal protein L21
分子量 formula_weight	11586.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 27 polymer

描述 description	50S ribosomal protein L22
分子量 formula_weight	12253.4 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 28 polymer

描述 description	50S ribosomal protein L23
分子量 formula_weight	11093.0 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 29 polymer

描述 description	50S ribosomal protein L24
分子量 formula_weight	11078.9 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 30 polymer

描述 description	50S ribosomal protein L25
分子量 formula_weight	10713.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	V

MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 31 polymer

描述 description	50S ribosomal protein L27
分子量 formula_weight	9015.3 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	W

AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 32 polymer

描述 description	50S ribosomal protein L29
分子量 formula_weight	7286.5 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	X

MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 33 polymer

描述 description	50S ribosomal protein L30
分子量 formula_weight	6423.6 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Y

AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 34 polymer

描述 description	50S ribosomal protein L31
分子量 formula_weight	7887.1 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Z

MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRFNKRFNIPGSK

来源 Source

来源生物 organism	Escherichia coli (strain K12)
NCBI 分类编号 ncbi_taxonomy_id	83333
宿主生物 host_organism	Escherichia coli K-12

Entity 35 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	111

Entity 36 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	512

▼

6. 折叠分类 (SCOP + CATH) 33 domains

SCOP 2.08 (33 domains)

结构域编号 domain_id	d2j2801
类 Class class	g — Small proteins
折叠类型 Fold fold	g.41 — Rubredoxin-like
超家族 Superfamily superfamily	g.41.8 — Zn-binding ribosomal proteins
家族 Family family	g.41.8.5 — Ribosomal protein L32p

结构域编号 domain_id	d2j2811
类 Class class	g — Small proteins
折叠类型 Fold fold	g.41 — Rubredoxin-like
超家族 Superfamily superfamily	g.41.8 — Zn-binding ribosomal proteins
家族 Family family	g.41.8.6 — Ribosomal protein L33p

结构域编号 domain_id	d2j2821
类 Class class	j — Peptides
折叠类型 Fold fold	j.118 — Ribosomal protein L34p
超家族 Superfamily superfamily	j.118.1 — Ribosomal protein L34p
家族 Family family	j.118.1.1 — Ribosomal protein L34p

结构域编号 domain_id	d2j2831
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.301 — L35p-like
超家族 Superfamily superfamily	d.301.1 — L35p-like
家族 Family family	d.301.1.1 — Ribosomal protein L35p

结构域编号 domain_id	d2j2841
类 Class class	g — Small proteins
折叠类型 Fold fold	g.42 — Ribosomal protein L36
超家族 Superfamily superfamily	g.42.1 — Ribosomal protein L36
家族 Family family	g.42.1.1 — Ribosomal protein L36

结构域编号 domain_id	d2j28c1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.3 — C-terminal domain of ribosomal protein L2

结构域编号 domain_id	d2j28c2
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d2j28d1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.43 — Reductase/isomerase/elongation factor common domain
超家族 Superfamily superfamily	b.43.3 — Translation proteins
家族 Family family	b.43.3.2 — Ribosomal protein L3

结构域编号 domain_id	d2j28e1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.22 — Ribosomal protein L4
超家族 Superfamily superfamily	c.22.1 — Ribosomal protein L4
家族 Family family	c.22.1.1 — Ribosomal protein L4

结构域编号 domain_id	d2j28f1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.77 — RL5-like
超家族 Superfamily superfamily	d.77.1 — RL5-like
家族 Family family	d.77.1.1 — Ribosomal protein L5

结构域编号 domain_id	d2j28g1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.141 — Ribosomal protein L6
超家族 Superfamily superfamily	d.141.1 — Ribosomal protein L6
家族 Family family	d.141.1.1 — Ribosomal protein L6

结构域编号 domain_id	d2j28g2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.141 — Ribosomal protein L6
超家族 Superfamily superfamily	d.141.1 — Ribosomal protein L6
家族 Family family	d.141.1.1 — Ribosomal protein L6

结构域编号 domain_id	d2j28h1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.99 — Ribosomal protein L9 C-domain
超家族 Superfamily superfamily	d.99.1 — Ribosomal protein L9 C-domain
家族 Family family	d.99.1.1 — Ribosomal protein L9 C-domain

结构域编号 domain_id	d2j28h2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.100 — MbtH/L9 domain-like
超家族 Superfamily superfamily	d.100.1 — L9 N-domain-like
家族 Family family	d.100.1.1 — Ribosomal protein L9 N-domain

结构域编号 domain_id	d2j28i1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.4 — DNA/RNA-binding 3-helical bundle
超家族 Superfamily superfamily	a.4.7 — Ribosomal protein L11, C-terminal domain
家族 Family family	a.4.7.1 — Ribosomal protein L11, C-terminal domain

结构域编号 domain_id	d2j28i2
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.47 — Ribosomal L11/L12e N-terminal domain
超家族 Superfamily superfamily	d.47.1 — Ribosomal L11/L12e N-terminal domain
家族 Family family	d.47.1.1 — Ribosomal L11/L12e N-terminal domain

结构域编号 domain_id	d2j28j1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.21 — Ribosomal protein L13
超家族 Superfamily superfamily	c.21.1 — Ribosomal protein L13
家族 Family family	c.21.1.1 — Ribosomal protein L13

结构域编号 domain_id	d2j28k1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.39 — Ribosomal protein L14
超家族 Superfamily superfamily	b.39.1 — Ribosomal protein L14
家族 Family family	b.39.1.1 — Ribosomal protein L14

结构域编号 domain_id	d2j28l1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.12 — Ribosomal proteins L15p and L18e
超家族 Superfamily superfamily	c.12.1 — Ribosomal proteins L15p and L18e
家族 Family family	c.12.1.1 — Ribosomal proteins L15p and L18e

结构域编号 domain_id	d2j28m1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.41 — alpha/beta-Hammerhead
超家族 Superfamily superfamily	d.41.4 — Ribosomal protein L16p/L10e
家族 Family family	d.41.4.2 — Ribosomal protein L16p

结构域编号 domain_id	d2j28n1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.188 — Prokaryotic ribosomal protein L17
超家族 Superfamily superfamily	d.188.1 — Prokaryotic ribosomal protein L17
家族 Family family	d.188.1.1 — Prokaryotic ribosomal protein L17

结构域编号 domain_id	d2j28o1
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.55 — Ribonuclease H-like motif
超家族 Superfamily superfamily	c.55.4 — Translational machinery components
家族 Family family	c.55.4.1 — Ribosomal protein L18 and S11

结构域编号 domain_id	d2j28p1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.6 — Ribosomal protein L19

结构域编号 domain_id	d2j28q1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.144 — PABP domain-like
超家族 Superfamily superfamily	a.144.2 — Ribosomal protein L20
家族 Family family	a.144.2.1 — Ribosomal protein L20

结构域编号 domain_id	d2j28r1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.155 — L21p-like
超家族 Superfamily superfamily	b.155.1 — L21p-like
家族 Family family	b.155.1.1 — Ribosomal protein L21p

结构域编号 domain_id	d2j28s1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.55 — Ribosomal protein L22
超家族 Superfamily superfamily	d.55.1 — Ribosomal protein L22
家族 Family family	d.55.1.1 — Ribosomal protein L22

结构域编号 domain_id	d2j28t1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.12 — Ribosomal proteins S24e, L23 and L15e
超家族 Superfamily superfamily	d.12.1 — Ribosomal proteins S24e, L23 and L15e
家族 Family family	d.12.1.1 — L23p

结构域编号 domain_id	d2j28u1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.1 — Ribosomal proteins L24p and L21e

结构域编号 domain_id	d2j28v1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.53 — Ribosomal protein L25-like
超家族 Superfamily superfamily	b.53.1 — Ribosomal protein L25-like
家族 Family family	b.53.1.1 — Ribosomal protein L25-like

结构域编号 domain_id	d2j28w1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.84 — Barrel-sandwich hybrid
超家族 Superfamily superfamily	b.84.4 — Ribosomal L27 protein-like
家族 Family family	b.84.4.1 — Ribosomal L27 protein

结构域编号 domain_id	d2j28x1
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.2 — Long alpha-hairpin
超家族 Superfamily superfamily	a.2.2 — Ribosomal protein L29 (L29p)
家族 Family family	a.2.2.1 — Ribosomal protein L29 (L29p)

结构域编号 domain_id	d2j28y1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.59 — Ribosomal protein L30p/L7e
超家族 Superfamily superfamily	d.59.1 — Ribosomal protein L30p/L7e
家族 Family family	d.59.1.1 — Ribosomal protein L30p/L7e

结构域编号 domain_id	d2j28z1
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.325 — L28p-like
超家族 Superfamily superfamily	d.325.1 — L28p-like
家族 Family family	d.325.1.2 — Ribosomal protein L31p

▶

7. 引用文献 (1)

▶

晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	1

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	9.500 Å
最低分辨率 resolution_low	— Å
R 因子 r_factor	—
R_work r_work	—
R_free r_free	—

分辨率 resolution	9.50 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	—

fit	/app/data/saxs_computation/j2/2j28/2j28.fit
pddf	/app/data/pr_computation/j2/2j28/2j28.pr.out
profile	/app/data/saxs_computation/j2/2j28/2j28.dat

MODEL OF E. COLI SRP BOUND TO 70S RNCS

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

冷冻电镜 EM 3D

5. 实体与聚合体信息 (36)

Entity 1 polymer

聚合体 Polymer

来源 Source

Entity 2 polymer

聚合体 Polymer

来源 Source

Entity 3 polymer

聚合体 Polymer

来源 Source

Entity 4 polymer

聚合体 Polymer

来源 Source

Entity 5 polymer

聚合体 Polymer

来源 Source

Entity 6 polymer

聚合体 Polymer

来源 Source

Entity 7 polymer

聚合体 Polymer

来源 Source

Entity 8 polymer

聚合体 Polymer

来源 Source

Entity 9 polymer

聚合体 Polymer

来源 Source

Entity 10 polymer

聚合体 Polymer

来源 Source

Entity 11 polymer

聚合体 Polymer

来源 Source

Entity 12 polymer

聚合体 Polymer

来源 Source

Entity 13 polymer

聚合体 Polymer

来源 Source

Entity 14 polymer

聚合体 Polymer

来源 Source

Entity 15 polymer

聚合体 Polymer

来源 Source

Entity 16 polymer

聚合体 Polymer

来源 Source

Entity 17 polymer

聚合体 Polymer

来源 Source

Entity 18 polymer

聚合体 Polymer

来源 Source

Entity 19 polymer

聚合体 Polymer

来源 Source

Entity 20 polymer

聚合体 Polymer

来源 Source

Entity 21 polymer

聚合体 Polymer

来源 Source

Entity 22 polymer

聚合体 Polymer

来源 Source

Entity 23 polymer

聚合体 Polymer