9fdy

Betaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transforming growth factor beta-1

Homo sapiens

UniProt P01137

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 5 Transforming growth factor beta receptor type 3 × 1 (P26342) TGF-beta receptor type-2 × 2 (P37173) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TGFB1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–112; UniProt 279–390 Author chain B; PDBConstruct 1–112; UniProt 279–390

Transforming growth factor beta receptor type 3

Rattus norvegicus

UniProt P26342

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 5 Transforming growth factor beta-1 × 2 (P01137) TGF-beta receptor type-2 × 2 (P37173) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TGBR3_RAT
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 4–333; UniProt 31–360

TGF-beta receptor type-2

Homo sapiens

UniProt P37173

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 5 Transforming growth factor beta-1 × 2 (P01137) Transforming growth factor beta receptor type 3 × 1 (P26342) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TGFR2_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 2–113; UniProt 42–153 Author chain E; PDBConstruct 2–113; UniProt 42–153

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9fdy
Deposition date deposition_date2024-05-17
Last revision last_revision2025-03-12
Structure title titleBetaglycan Orphan Domain (ratBGo) in complex with TGF-b1 and extracellular domain of TGFBRII
Keywords keywordsComplex, Betaglycan, TGFBR3, TGFb1, TGFBR2, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9fdy__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9fdy__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9fdy__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)36.10 Å
Rg (electron density)36.10 Å
Total Rg36.25 Å
Atom count6119
Residues770
Excluded volume109100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9fdy__assembly_1__model_1 pentameric (5) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)