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9fo3

Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

;CAP255 gp140 SpyTag-SpyCatcher mi3,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase ;

Thermotoga maritima

UniProt Q9WXS1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1vlw 1vlw 1vlw 8e01 8e01

5 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1vlw 1wa3 1wa3 8e01 8e01 8e01 9fo3

7 assemblies

Heteromeric or nucleic-acid complex
5kp9 5kp9 5kp9 5kp9 5kp9 7b3y 8a8n 8jga 8jgc 8szz 8tvb 8tyc

17 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q9WXS1_THEMA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0； PDBConstruct 114–318； UniProt 1–205 Author chain 1； PDBConstruct 114–318； UniProt 1–205 Author chain 2； PDBConstruct 114–318； UniProt 1–205 Author chain 3； PDBConstruct 114–318； UniProt 1–205 Author chain 4； PDBConstruct 114–318； UniProt 1–205 Author chain 5； PDBConstruct 114–318； UniProt 1–205 Author chain 6； PDBConstruct 114–318； UniProt 1–205 Author chain 7； PDBConstruct 114–318； UniProt 1–205 Author chain A； PDBConstruct 114–318； UniProt 1–205 Author chain B； PDBConstruct 114–318； UniProt 1–205 Author chain C； PDBConstruct 114–318； UniProt 1–205 Author chain D； PDBConstruct 114–318； UniProt 1–205 Author chain E； PDBConstruct 114–318； UniProt 1–205 Author chain F； PDBConstruct 114–318； UniProt 1–205 Author chain G； PDBConstruct 114–318； UniProt 1–205 Author chain H； PDBConstruct 114–318； UniProt 1–205 Author chain I； PDBConstruct 114–318； UniProt 1–205 Author chain J； PDBConstruct 114–318； UniProt 1–205 Author chain K； PDBConstruct 114–318； UniProt 1–205 Author chain L； PDBConstruct 114–318； UniProt 1–205 Author chain M； PDBConstruct 114–318； UniProt 1–205 Author chain N； PDBConstruct 114–318； UniProt 1–205 Author chain O； PDBConstruct 114–318； UniProt 1–205 Author chain P； PDBConstruct 114–318； UniProt 1–205 Author chain Q； PDBConstruct 114–318； UniProt 1–205 Author chain R； PDBConstruct 114–318； UniProt 1–205 Author chain S； PDBConstruct 114–318； UniProt 1–205 Author chain T； PDBConstruct 114–318； UniProt 1–205 Author chain U； PDBConstruct 114–318； UniProt 1–205 Author chain V； PDBConstruct 114–318； UniProt 1–205 Author chain W； PDBConstruct 114–318； UniProt 1–205 Author chain X； PDBConstruct 114–318； UniProt 1–205 Author chain Y； PDBConstruct 114–318； UniProt 1–205 Author chain Z； PDBConstruct 114–318； UniProt 1–205 Author chain a； PDBConstruct 114–318； UniProt 1–205 Author chain b； PDBConstruct 114–318； UniProt 1–205 Author chain c； PDBConstruct 114–318； UniProt 1–205 Author chain d； PDBConstruct 114–318； UniProt 1–205 Author chain e； PDBConstruct 114–318； UniProt 1–205 Author chain f； PDBConstruct 114–318； UniProt 1–205 Author chain g； PDBConstruct 114–318； UniProt 1–205 Author chain h； PDBConstruct 114–318； UniProt 1–205 Author chain i； PDBConstruct 114–318； UniProt 1–205 Author chain j； PDBConstruct 114–318； UniProt 1–205 Author chain k； PDBConstruct 114–318； UniProt 1–205 Author chain l； PDBConstruct 114–318； UniProt 1–205 Author chain m； PDBConstruct 114–318； UniProt 1–205 Author chain n； PDBConstruct 114–318； UniProt 1–205 Author chain o； PDBConstruct 114–318； UniProt 1–205 Author chain p； PDBConstruct 114–318； UniProt 1–205 Author chain q； PDBConstruct 114–318； UniProt 1–205 Author chain r； PDBConstruct 114–318； UniProt 1–205 Author chain s； PDBConstruct 114–318； UniProt 1–205 Author chain t； PDBConstruct 114–318； UniProt 1–205 Author chain u； PDBConstruct 114–318； UniProt 1–205 Author chain v； PDBConstruct 114–318； UniProt 1–205 Author chain w； PDBConstruct 114–318； UniProt 1–205 Author chain x； PDBConstruct 114–318； UniProt 1–205 Author chain y； PDBConstruct 114–318； UniProt 1–205 Author chain z； PDBConstruct 114–318； UniProt 1–205

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9fo3
Deposition date deposition_date2024-06-11
Structure title titleStructure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.
Keywords keywordsVaccine, HIV-1, mi3, Nanoparticle, VLP, IMMUNE SYSTEM; IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9fo3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9fo3__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9fo3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)111.40 Å
Total Rg111.40 Å
Atom count92520
Residues12240
Excluded volume1690500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9fo3__assembly_1__model_1 60-meric （60） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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7. Citations (1)