9g28

snR30 snoRNP - State 2 - Utp23-Krr1-deltaC3

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

H/ACA ribonucleoprotein complex subunit CBF5

OrganismNot specified

UniProt P33322

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CBF5_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–483; UniProt 1–483 Author chain E; PDBConstruct 1–483; UniProt 1–483

H/ACA ribonucleoprotein complex subunit NOP10

OrganismNot specified

UniProt Q6Q547

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NOP10_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain B; PDBConstruct 1–58; UniProt 1–58 Author chain F; PDBConstruct 1–58; UniProt 1–58

H/ACA ribonucleoprotein complex subunit GAR1

OrganismNot specified

UniProt P28007

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name GAR1_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain C; PDBConstruct 1–205; UniProt 1–205

H/ACA ribonucleoprotein complex subunit NHP2

OrganismNot specified

UniProt P32495

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NHP2_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain D; PDBConstruct 1–156; UniProt 1–156 Author chain G; PDBConstruct 1–156; UniProt 1–156

KRR1 small subunit processome component

OrganismNot specified

UniProt P25586

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name KRR1_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain H; PDBConstruct 1–316; UniProt 1–316

Protein KRI1

OrganismNot specified

UniProt P42846

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name KRI1_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–591; UniProt 1–591

40S ribosomal protein S13

OrganismNot specified

UniProt P05756

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S14-A × 1 (P06367) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS13_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–151; UniProt 1–151

40S ribosomal protein S14-A

OrganismNot specified

UniProt P06367

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) rRNA-processing protein UTP23 × 1 (Q12339) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RS14A_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain L; PDBConstruct 1–137; UniProt 1–137

rRNA-processing protein UTP23

OrganismNot specified

UniProt Q12339

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 12 RNA 2 RDN18-1 × 1 snR30 × 1 H/ACA ribonucleoprotein complex subunit CBF5 × 2 (P33322) H/ACA ribonucleoprotein complex subunit NOP10 × 2 (Q6Q547) H/ACA ribonucleoprotein complex subunit GAR1 × 1 (P28007) H/ACA ribonucleoprotein complex subunit NHP2 × 2 (P32495) KRR1 small subunit processome component × 1 (P25586) Protein KRI1 × 1 (P42846) 40S ribosomal protein S13 × 1 (P05756) 40S ribosomal protein S14-A × 1 (P06367) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name UTP23_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–254; UniProt 1–254

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9g28
Deposition date deposition_date2024-07-10
Last revision last_revision2025-06-18
Structure title titlesnR30 snoRNP - State 2 - Utp23-Krr1-deltaC3
Keywords keywords90S, pre-ribosome, snoRNA, snR30, snoRNP, ribosome biogenesis, H/ACA, 18S rRNA, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9g28__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9g28__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9g28__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)52.54 Å
Rg (electron density)51.46 Å
Total Rg51.48 Å
Atom count20876
Residues2284
Excluded volume344160 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9g28__assembly_1__model_1 14-meric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (2)