9grx

NDH-PSI-LHCI supercomplex from S. oleracea

Method: ELECTRON MICROSCOPY D_max: 273.2 Å Quality: EXCELLENT

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	9grx
沉积日期 deposition_date	2024-09-13
结构标题 title	NDH-PSI-LHCI supercomplex from S. oleracea
关键词 keywords	NDH, PSI, Supercomplex, photosynthesis, electron transport chain, lipids, proton translocation, plastoquinone, ELECTRON TRANSPORT; ELECTRON TRANSPORT
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	98.48 Å
回转半径 Rg (电子) rg_electron	99.99 Å
零角强度 I(0) i0	32121000000.00
分子量 molecular_weight	1099100.0 kDa
排除体积 excluded_volume	1110300 Å³
包络体积 envelope_volume	2182100 Å³
水化壳体积 shell_volume	191350 Å³
包络直径 envelope_diameter	336.3 Å
壳层 Rg shell_rg	82.39 Å
包络 Rg envelope_rg	97.56 Å
形状 Rg shape_rg	99.97 Å
总 Rg total_rg	99.94 Å
总原子数 total_atoms	83864
残基数 n_residues	9086
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	273.2 Å
Rg (实空间) rg_real	94.77 Å
Rg 误差 (实空间) rg_real_error	1.10 Å
I(0) (实空间) i0_real	3.0880e+10
I(0) 误差 (实空间) i0_real_error	6.1840e+08
Rg (倒空间) rg_reciprocal	91.83 Å
I(0) (倒空间) i0_reciprocal	31420000000.0000
解质量估计 total_estimate	0.9064
解质量评级 solution_quality	EXCELLENT a EXCELLENT solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	68.3 Å
偏度 Skewness skewness	0.396
峰度 Kurtosis kurtosis	-0.738
角度范围 angular_range	— – 0.0800 Å⁻¹
当前正则化参数 α current_alpha	1.0780
最高正则化参数 α highest_alpha	490900000.0000
实空间数据点数 n_real_points	17
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.001; Oscil: 0.964; Stabil: 0.965; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.009

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (55)

Entity 1 polymer

描述 description	Photosynthetic NDH subunit of lumenal location 1, chloroplastic
分子量 formula_weight	18606.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	0
原子数 atom_count	83864

KETPERYTAFVDKADGYSYVYPSDWREFDFRAHDSAFKDRYLQLQNVRLSFIPTDKNDVHDLGPMEDVIQTLVKNILAAPNQMTDIREIQERSVDGKNYWTFEYNLTSPNFSVTHFTTLAIANGRYYTLTVSANERRWKRYRNKLKVVADSFKVFEI

Entity 2 polymer

描述 description	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic
分子量 formula_weight	44622.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	1

NPWLDLFYDGEDEPETEYGSMFSDGKQDEDPYPRDNPENPYGFLKFPQGYAVEMASLGSKVRGDVRRCCCVVSGGVYDNLLFFPAIQLIKDRYPGVQIDIITSARGKQTYEMNKNVRWATVYDLDDNFPDPAEYTDMLGLLKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYVYPNVNAAGAGLLLSETFTPDSMNLSEGGYNMYHQMIEWLGRPVKDIPQHLASPLKVSISRKLKEAVEAKYKEAGAEKGKYVVIHGIKCDSKASMQSEGDTDSLLPIEIWAEISQAIRGVTPIFVIPHEKLREDVEEIVGEETSIVFITTPGQLAALINDSVGVIATNTAAIQLALAREKPSIALFCSEEKGKCFVPDAEGKKCTVIASKTGNLADIDVAVVKDTLKVF

Entity 3 polymer

描述 description	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic
分子量 formula_weight	40259.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	2

MASLLPFSLLKPTTICKASSTAAPPAALVESLNDQFARKGINFLESTDTSTNISSPIVELSVRNGSSLKLQLSNAHVTSYKPKVYWKDDGFEEVLYTLPLSKGGIGLVLNDVTQPVTTTKKPDPFRRSEPAAAAAAKGSLLAGAEWSVRDVDSDSFDAVQVELSCTSGSLEITYVVSLYPESMASAVLVKNNGNKAIGLTSAILSHIQFKKRSGSGIQGLQGCSYCSHPPLSSPFEIVSPAEAMKAEDPGMFSFSSESPSKLGEWTTQEVPITILKNKLSRVYTAPPSERSKKFYRTTPSKYETVDQGRELVFRVIRMGYDDILVSSPGSLSEKYGRDYFICTGPASILVPVTVNPGEEWRGAQVIEHDNLT

Entity 4 polymer

描述 description	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic
分子量 formula_weight	15614.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	3

EEEELEPPYVGFAFVSSVLLPDGTPDMHLRSATGGQKLRDIMLDNDIDLYGPYARPLLNCAGGGTCASCMVEVIEGKELLNPRTEKEKEHLKKKPKNWRLACQITVGTPESRGMVVIQQLPEWKAHEWKYEKDGPIVSE

Entity 5 polymer

描述 description	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic
分子量 formula_weight	10763.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	4

MAVLVEHVEGQRDLITHKSIWHLSDAAIKNVYLFYMMFTCWGCCVFGAAKDPYYDSEQYRGDGGDGTGHWVYEKQEDIEEAGRAALWREELIE

Entity 6 polymer

描述 description	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic
分子量 formula_weight	17772.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	5

GLTDIEPDLNEDPRDRWATNGVAPEDFVYGKYDEHHTFYESSEKGSFWGAVAEEYNSMDPPTGFQGLISWLFLPAVAAGMYFNVPGDYLFIGAGLFVIIFCIIEMDKPDQPHNFEPQIYNMERGARDKLIADYNTMDIWDFNEKYGDLWDFTLK

Entity 7 polymer

描述 description	Photosynthetic NDH subunit of lumenal location 2, chloroplastic
分子量 formula_weight	14876.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	6

EFKWGTRSFIWERFFEPGLSPEDAVSRIKNTAEGLHSLRHMLETMSWRYVIFYIRLKQAYLKQDMKSAMIMVPEGRRDDYSNAANELVDNMAEFDYYVRTPKVYESYVSYEKTLKSIDNLLGFLA

Entity 8 polymer

描述 description	Photosynthetic NDH subunit of lumenal location 3, chloroplastic
分子量 formula_weight	16452.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	7

QLWLDGPLPGLRPAENKIGNEETGTRTFLKKGIYMANIGTKGSALRLRKYAFDLLAMEDLIGQDTLNYVRRYLRFKGTFMYYDFDKVISAAPVADKPPLTNLANRLFDNFEKLQEAVKLKDVPLTRSCYDDTAVTLQEVMNRMA

Entity 9 polymer

描述 description	peptidylprolyl isomerase
分子量 formula_weight	15352.5 kDa
EC 编号 ec_number	5.2.1.8
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	8

LRVEYYATTAEPSCELNLVRSGLGYCDLVVGSGVPAPYNTLINVHYTARFSDETVFDSSYKRGRPLTMRIGVGKVIKGLDQGIFGGDGVPPMQVGGKRKLRIPPHLGYGPEPAGCFSGDCNVPANATLLYDVTFMGVYSGNRA

Entity 10 polymer

描述 description	Peptidyl-prolyl cis-trans isomerase
分子量 formula_weight	18900.4 kDa
EC 编号 ec_number	5.2.1.8
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	9

PLQSKVTNKVYFDISIGNPVGKLVGRVVIGLFGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLTHTGPGTVSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGQVLEGMDIVKLIESSETDRGDRPKKRVVISECGELPA

Entity 11 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
分子量 formula_weight	38985.6 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A

FSRLEFLKEVYETIWMLFPILILVLGITIGVLVIVWLEREISASIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTYLFSIGPSIAVISILLGYLIIPFGSRLVLADLSIGVFLWIAVSSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNLSIPYIFISEFFEINKIDGVFGTTIGIFITLAKTFLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSSQLFSL

Entity 12 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
分子量 formula_weight	54026.1 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

KAFHLLLFDGSLIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMALTEFLLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKIYLFWCGWQAGLYFLVLIGLLTSVLSIYYYLKIIKLLMTGRNQEITPHVRNYRRSPLRSKNSIEFSMIVCVIASTIPGISMNPIITIAQD

Entity 13 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
分子量 formula_weight	13270.7 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

YEYDIFWAFLIISSVIPILAFLFSGILAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGLVYAWRKGALEW

Entity 14 polymer

描述 description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
分子量 formula_weight	55980.2 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

SFPWLTTIVVLPIFAGSLIFLFPHRGNKVIRWYTICISMIELLLMTYVFFYHFQPDDPLIQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRNSQLFHFLMLAMYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTMQIIYAASTSPGQRNLKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKYLLIPKLLITFGMAIGMILTPIYLLSMSRQMFYGYKLFNISNSSFFDSGPRELFVSTSIFLPVIGIGVYPDLVLSLSVEKVEAILSNYFYR

Entity 15 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic
分子量 formula_weight	11085.0 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MILEHVLVLSAFLFSIGIYGLVTSRNLVRALMCLELILNAVNLNFVTFSDFFDSRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRNRKSIRINQSNLLN

Entity 16 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
分子量 formula_weight	84590.1 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MEHIYQYAWIIPFLPLPVPLLIGAGLLFFPTATKNLRRIWAFSSISLLSIVMIFSMKLAIQQINSNSIYQYLWSWTINNDFSLEFGYLMDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIFNNLIKNNEVNSLFCILCAFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMYVISFIGIITVLLGATLALAQKDIKRSLAYYTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLASGSLIHSMGTIVGYSPDKSQNMVLMGGLTKHVPITKTSFLIGTLSLCGIPPLACFWSKDEILNDSWVYSPIFAIIAYFTAGLTAFYMFRIYLLTFEGHLNFFCKNYSGKKSSSFYSISLWGKKELKTINQKISLLNLLTMNNKERASFFSKKPYEINVKLTKLLRSFITITYFENKNISLYPYESDNTMLFPLIILIMFTLFVGFIGIPFNQEGMDLDILTKWLTPSINLLHSNSENFVDWYEFVINAIFSISIAFFGIFIAFFFYKPIYSSLKNFDLINSFDKRGQKRILGDNIITIIYNWSANRGYIDAFYSTFLIKGIRSLSELVSFFDRRIIDGIPNGFGVTSFFVGEGIKYVGGGRISSYLFWYLLYVSIFLFIFTFT

Entity 17 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
分子量 formula_weight	19193.7 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MDLPGPIHDFLLVFLGSGLILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMSGPEYDKKFQLWTVGDGVTSLVCISLFVSLISTILNTSWYGIIWTTKSNQILEQDLINASQQIGIHLSTDFFLPFELISIILLVSLIGAIAVARQ

Entity 18 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
分子量 formula_weight	45172.3 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

TTRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPIVGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLIGLTEYQKLITRNPIFLERVENVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFDWEVQWQKEGDSLARYLIRIGEMAESVKIIQQALEGIPGGPYENLEIRRFNRIKYPEWNDFEYRFISKKPSPAFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDR

Entity 19 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
分子量 formula_weight	19004.9 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MVTGFINYGQQTIRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPISITDDYTIRTILNSPQTKE

Entity 20 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
分子量 formula_weight	18687.3 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRRNPRIPSVFWVWKSADFQERESYDMFGISYDNHPRLKRILMPESWIGWPLRKDYIVPNFYEIQDAY

Entity 21 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
分子量 formula_weight	22789.4 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

MNSIEFPLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQPKNRCFTINHKFRVGRSIHTGNYDQALLYKYKS

Entity 22 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
分子量 formula_weight	13194.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

AVTGVNNQEDLIWVLLKAGVVGFCYFLIMPPIIMNWLRIRWYRRNLLEMYFQFMFVFIFFPGILVWAPFLNFRKFPRDPTMKYPWSKPENPSEVKGGFLKYPWATIEDY

Entity 23 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
分子量 formula_weight	16702.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

EMKEVLKRATPIEAQVNVKSRNLEREYGGQWLSSVTRHVRIYAAYIDPVTCAMDQTQMDKLTLMIDPTDEFLWNDETLNKVYVYFEELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYEGEIKYNMNSRVLNFSMGKPRMK

Entity 24 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
分子量 formula_weight	18727.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

IGIRDFIGGDLVKFDLGTWLSDVEEHKAIAMYSPHEGGYEGRYLNRLRYQGYHFLDVSARGLGDPETTLTKVHPVCPPHVGKQPIARWWFPPEVDYRLEALPSDAKGLVVWVIEAKVLSKAELQFLAMLPSLRPKVRVIAECGNWRKVMWKPLKEIAGLVPLQEA

Entity 25 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
分子量 formula_weight	11127.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

PPPKKPPKPVYSMKKGQIVRVEREKYLDSVNYLSVGHPKYYKGLDYIYEDRGEVLDLRFFETGEYALVSWVGIPTSPAWLPTDMLIKSDKLNYER

Entity 26 polymer

描述 description	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
分子量 formula_weight	27127.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR

Entity 27 polymer

描述 description	Photosystem I P700 chlorophyll a apoprotein A1
分子量 formula_weight	82145.0 kDa
EC 编号 ec_number	1.97.1.12
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	a

EVKILVDRDPVKTSFEAWAKPGHFSRTIAKGPETTTWIWNLHADAHDFDSHTSDLEEISRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQFLNAGVDPKEIPLPHELILNRDLLAQLYPSFAEGATPFFTLNWSKYADFLTFRGGLDPVTGGLWLTDTAHHHLAIAILFLIAGHMYRTNWGIGHGLKDILEAHKGPFTGQGHKGLYEILTTSWHAQLALNLAMLGSLTIVVAHHMYAMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWACIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPSATAPGATASTSLTWGGSDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARIIAVG

Entity 28 polymer

描述 description	Photosystem I P700 chlorophyll a apoprotein A2
分子量 formula_weight	82377.5 kDa
EC 编号 ec_number	1.97.1.12
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	b

ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSVISLLGGWLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFVFLVAGHMYRTNFGIGHSMKDLLEAHIPPGGRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTSGPAFNAGRSIWLPGWLNAVNENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG

Entity 29 polymer

描述 description	Photosystem I iron-sulfur center
分子量 formula_weight	9035.5 kDa
EC 编号 ec_number	1.97.1.12
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	c

MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLGY

Entity 30 polymer

描述 description	Photosystem I reaction center subunit II, chloroplastic
分子量 formula_weight	16053.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	d

GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL

Entity 31 polymer

描述 description	Photosystem I reaction center subunit IV, chloroplastic
分子量 formula_weight	7736.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	e

KPPPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA

Entity 32 polymer

描述 description	Photosystem I reaction center subunit III, chloroplastic
分子量 formula_weight	17151.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	f

DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDNN

Entity 33 polymer

描述 description	Photosystem I reaction center subunit V, chloroplastic
分子量 formula_weight	10719.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	g

LSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF

Entity 34 polymer

描述 description	Photosystem I reaction center subunit VI, chloroplastic
分子量 formula_weight	10391.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	h

KYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI

Entity 35 polymer

描述 description	Photosystem I reaction center subunit VIII
分子量 formula_weight	3458.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	i

MNFPSIFVPLVGLVFPAIAMASLFLYVQKNK

Entity 36 polymer

描述 description	Photosystem I reaction center subunit IX
分子量 formula_weight	4845.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	j

MRDFKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF

Entity 37 polymer

描述 description	PSI-K
分子量 formula_weight	13229.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	k

MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGVVLGLKNIGAI

Entity 38 polymer

描述 description	Photosystem I reaction center subunit XI, chloroplastic
分子量 formula_weight	16988.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	l

QVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK

Entity 39 polymer

描述 description	Chlorophyll a-b binding protein, chloroplastic
分子量 formula_weight	23947.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	w

GGISSVCEPLPPDRPLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPETLRWFAQAELMHSRWAMLAVAGILIPEWLESIGLMENFNWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADYVNPGCVDIEPKLPNRKNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQAVYTGEGPLENLSRHVADPGHCNIFSA

Entity 40 polymer

描述 description	Chlorophyll a-b binding protein, chloroplastic
分子量 formula_weight	22135.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	x

KKGEWLPGLASPGYLTGSLPGDNGFDPLALAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIDVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTTEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLQQHLSDPWHNTIIQTF

Entity 41 polymer

描述 description	Chlorophyll a-b binding protein, chloroplastic
分子量 formula_weight	24168.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	y

RPLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH

Entity 42 polymer

描述 description	Chlorophyll a-b binding protein, chloroplastic
分子量 formula_weight	21184.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	z

EWMPGQPRPAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP

Entity 43 non-polymer

描述 description	BETA-CAROTENE
分子量 formula_weight	536.9 kDa
来源方法 src_method	syn
拷贝数 entity_count	29

Entity 44 non-polymer

描述 description	(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
分子量 formula_weight	751.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	24

Entity 45 non-polymer

描述 description	4-trans-(4-trans-Propylcyclohexyl)-cyclohexyl alpha-maltoside
分子量 formula_weight	548.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 46 non-polymer

描述 description	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
分子量 formula_weight	787.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	12

Entity 47 non-polymer

描述 description	5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE
分子量 formula_weight	613.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 48 non-polymer

描述 description	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
分子量 formula_weight	795.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	7

Entity 49 non-polymer

描述 description	IRON/SULFUR CLUSTER
分子量 formula_weight	351.6 kDa
来源方法 src_method	syn
拷贝数 entity_count	6

Entity 50 non-polymer

描述 description	CHLOROPHYLL A
分子量 formula_weight	893.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	144

Entity 51 non-polymer

描述 description	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
分子量 formula_weight	949.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	3

Entity 52 non-polymer

描述 description	CHLOROPHYLL A ISOMER
分子量 formula_weight	893.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 53 non-polymer

描述 description	PHYLLOQUINONE
分子量 formula_weight	450.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 54 non-polymer

描述 description	CHLOROPHYLL B
分子量 formula_weight	907.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	9

Entity 55 non-polymer

描述 description	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
分子量 formula_weight	568.9 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

▶

7. 引用文献 (1)

▶

分辨率 resolution	3.19 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	38385

fit	/app/data/saxs_computation/gr/9grx/9grx.fit
pddf	/app/data/pr_computation/gr/9grx/9grx.pr.out
profile	/app/data/saxs_computation/gr/9grx/9grx.dat

NDH-PSI-LHCI supercomplex from S. oleracea

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

冷冻电镜 EM 3D

5. 实体与聚合体信息 (55)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 polymer

聚合体 Polymer

Entity 28 polymer

聚合体 Polymer

Entity 29 polymer

聚合体 Polymer

Entity 30 polymer

聚合体 Polymer

Entity 31 polymer

聚合体 Polymer

Entity 32 polymer

聚合体 Polymer

Entity 33 polymer

聚合体 Polymer

Entity 34 polymer

聚合体 Polymer

Entity 35 polymer

聚合体 Polymer

Entity 36 polymer