9ha3

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Large ribosomal subunit protein bL34

OrganismNot specified

UniProt P0A7P5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL34_ECOLI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 2; PDBConstruct 1–46; UniProt 1–46

Large ribosomal subunit protein uL13

OrganismNot specified

UniProt P0AA10

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL13_ECOLI
Isoform —
PDB entities 2
Chains and sequence ranges Author chain J; PDBConstruct 1–142; UniProt 1–142

Large ribosomal subunit protein bL20

OrganismNot specified

UniProt P0A7L3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL20_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain Q; PDBConstruct 1–117; UniProt 2–118

Large ribosomal subunit protein bL21

OrganismNot specified

UniProt P0AG48

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL21_ECOLI
Isoform —
PDB entities 4
Chains and sequence ranges Author chain R; PDBConstruct 1–103; UniProt 1–103

Large ribosomal subunit protein uL23

OrganismNot specified

UniProt P0ADZ0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL23_ECOLI
Isoform —
PDB entities 5
Chains and sequence ranges Author chain T; PDBConstruct 1–93; UniProt 1–93

Large ribosomal subunit protein uL24

OrganismNot specified

UniProt P60624

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL24_ECOLI
Isoform —
PDB entities 6
Chains and sequence ranges Author chain U; PDBConstruct 1–102; UniProt 2–103

Large ribosomal subunit protein uL29

OrganismNot specified

UniProt P0A7M6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL29_ECOLI
Isoform —
PDB entities 7
Chains and sequence ranges Author chain Y; PDBConstruct 1–63; UniProt 1–63

Large ribosomal subunit protein uL30

OrganismNot specified

UniProt P0AG51

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL30_ECOLI
Isoform —
PDB entities 8
Chains and sequence ranges Author chain Z; PDBConstruct 1–58; UniProt 2–59

50S ribosomal protein L3

OrganismNot specified

UniProt P60438

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL3_ECOLI
Isoform —
PDB entities 10
Chains and sequence ranges Author chain D; PDBConstruct 1–209; UniProt 1–209

Large ribosomal subunit protein uL4

OrganismNot specified

UniProt P60723

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL4_ECOLI
Isoform —
PDB entities 11
Chains and sequence ranges Author chain E; PDBConstruct 1–201; UniProt 1–201

Large ribosomal subunit protein uL15

OrganismNot specified

UniProt P02413

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein bL17 × 1 (P0AG44) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL15_ECOLI
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–143; UniProt 2–144

Large ribosomal subunit protein bL17

OrganismNot specified

UniProt P0AG44

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Apidaecins type 22 × 1 (P35581) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL17_ECOLI
Isoform —
PDB entities 13
Chains and sequence ranges Author chain N; PDBConstruct 1–120; UniProt 1–120

Apidaecins type 22

OrganismNot specified

UniProt P35581

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 13 RNA 1 Large ribosomal subunit protein bL34 × 1 (P0A7P5) Large ribosomal subunit protein uL13 × 1 (P0AA10) Large ribosomal subunit protein bL20 × 1 (P0A7L3) Large ribosomal subunit protein bL21 × 1 (P0AG48) Large ribosomal subunit protein uL23 × 1 (P0ADZ0) Large ribosomal subunit protein uL24 × 1 (P60624) Large ribosomal subunit protein uL29 × 1 (P0A7M6) Large ribosomal subunit protein uL30 × 1 (P0AG51) 23S ribosomal RNA × 1 50S ribosomal protein L3 × 1 (P60438) Large ribosomal subunit protein uL4 × 1 (P60723) Large ribosomal subunit protein uL15 × 1 (P02413) Large ribosomal subunit protein bL17 × 1 (P0AG44) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name APD22_APIME
Isoform —
PDB entities 14
Chains and sequence ranges Author chain y; PDBConstruct 1–17; UniProt 44–60

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9ha3
Deposition date deposition_date2024-11-01
Last revision last_revision2025-01-22
Structure title titlePooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137
Keywords keywordsribosome, antimicrobial peptide, RNA, ribosomal protein, PrAMP, proline-rich peptide, antibiotics, 50S, Api137; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9ha3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9ha3__assembly_1__model_1 | I(q)

10-2 10-1 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9ha3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)62.33 Å
Rg (electron density)62.36 Å
Total Rg62.46 Å
Atom count52595
Residues3292
Excluded volume780600 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9ha3__assembly_1__model_1 14-meric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (14)

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7. Citations (1)