9ka7

Crystal structure of beta-ketoacyl-ACP synthase FabH C112Q in complex with malonyl-ACP from E. coli

Method: X-RAY DIFFRACTION Dmax: 93.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-ketoacyl-[acyl-carrier-protein] synthase III

Escherichia coli

UniProt P0A6R0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 1–317 Chain B; UniProt 1–317 Mutation:C112Q Acyl carrier protein × 1 (P0A6A8) A1EE0 3-[2-[3-[[(2R)-4-bis(oxidanyl)phosphanyloxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-oxidanylidene-propanoic acid × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;1.0M sodium chloride,0.1M HEPES PH7.0 Resolution 2.30 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

18 other PDB entries and 19 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FABH_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 21–337; UniProt 1–317 Author chain B; PDBConstruct 21–337; UniProt 1–317

Acyl carrier protein

Escherichia coli

UniProt P0A6A8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain C; UniProt 3–78 Not recorded Beta-ketoacyl-[acyl-carrier-protein] synthase III × 2 (P0A6R0) A1EE0 3-[2-[3-[[(2R)-4-bis(oxidanyl)phosphanyloxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-oxidanylidene-propanoic acid × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;1.0M sodium chloride,0.1M HEPES PH7.0 Resolution 2.30 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

39 other PDB entries and 69 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACP_ECOLI
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 4–79; UniProt 3–78

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9ka7

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9ka7
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9ka7
Deposition date deposition_date2024-10-28
最后修订 last_revision2025-09-10
Structure title titleCrystal structure of beta-ketoacyl-ACP synthase FabH C112Q in complex with malonyl-ACP from E. coli
Keywords keywordsbeta-ketoacyl-ACP synthase FabH, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.19
Radius of gyration Rg (electron density) rg_electron26.51
Forward intensity I(0) i0184165000.00
Molecular weight molecular_weight70857.0 kDa
Excluded volume excluded_volume67799 ų
Envelope volume envelope_volume111340 ų
Hydration-shell volume shell_volume34676 ų
Envelope diameter envelope_diameter100.7
Shell Rg shell_rg34.15
Envelope Rg envelope_rg27.01
Shape Rg shape_rg26.48
Total Rg total_rg27.08
Total atoms total_atoms5348
Residues n_residues713
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax93.7
Rg (real space) rg_real27.20
Rg uncertainty (real space) rg_real_error0.80
I(0) (real space) i0_real1.8420e+08
I(0) uncertainty (real space) i0_real_error2.9200e+06
Rg (reciprocal space) rg_reciprocal27.20
I(0) (reciprocal space) i0_reciprocal184200000.0000
Solution quality estimate total_estimate0.8657
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary32.3
Skewness Skewness skewness0.427
Kurtosis Kurtosis kurtosis-0.140
Angular range angular_range— – 0.2900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha37010000.0000
Real-space data points n_real_points59
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.760; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.979

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)