← Back to search
9ld7

The capsid of mature phage N4

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Major capsid protein

OrganismNot specified

UniProt Q859Q5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 720 32 kDa protein × 180 （A0MZA7） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 12 32 kDa protein × 3 （A0MZA7） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 60 32 kDa protein × 15 （A0MZA7） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 72 32 kDa protein × 18 （A0MZA7） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 12 32 kDa protein × 3 （A0MZA7） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9e99 9lbz 9ld7 9ld7 9ld7 9ld7 9ld7

7 assemblies

View Construct and Data Evidence
UniProt name CAPSD_BPN4
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–401； UniProt 1–401 Author chain B； PDBConstruct 1–401； UniProt 1–401 Author chain C； PDBConstruct 1–401； UniProt 1–401 Author chain D； PDBConstruct 1–401； UniProt 1–401 Author chain F； PDBConstruct 1–401； UniProt 1–401 Author chain H； PDBConstruct 1–401； UniProt 1–401 Author chain I； PDBConstruct 1–401； UniProt 1–401 Author chain J； PDBConstruct 1–401； UniProt 1–401 Author chain K； PDBConstruct 1–401； UniProt 1–401

32 kDa protein

OrganismNot specified

UniProt A0MZA7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 720 Major capsid protein × 540 （Q859Q5） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 12 Major capsid protein × 9 （Q859Q5） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 60 Major capsid protein × 45 （Q859Q5） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 72 Major capsid protein × 54 （Q859Q5） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 12 Major capsid protein × 9 （Q859Q5） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9e99 9lbz 9ld7 9ld7 9ld7 9ld7 9ld7

7 assemblies

View Construct and Data Evidence
UniProt name A0MZA7_BPN4
Isoform —
PDB entities 2
Chains and sequence ranges Author chain E； PDBConstruct 1–279； UniProt 1–279 Author chain G； PDBConstruct 1–279； UniProt 1–279 Author chain L； PDBConstruct 1–279； UniProt 1–279

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9ld7
Deposition date deposition_date2025-01-05
Structure title titleThe capsid of mature phage N4
Keywords keywordsComplex, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9ld7__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9ld7__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9ld7__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)353.90 Å
Total Rg353.80 Å
Atom count2038140
Residues266580
Excluded volume36313000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9ld7__assembly_1__model_1 720-meric （720） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9ld7__assembly_2__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 9ld7__assembly_3__model_1 60-meric （60） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 9ld7__assembly_4__model_1 72-meric （72） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 9ld7__assembly_5__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▶

7. Citations (1)