|
2RQB
Solution structure of MDA5 CTD
Deposited 2009-03-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
896–1025(130 aa)
Fragment:UNP residues 896-1025
|
Not recorded
|
ZN ZINC ION × 1
|
SOLUTION NMR
NMR measurement conditions
pH 7;298 K;Ionic strength (raw mmCIF value) 0.25;Pressure ambient
NMR sample composition
1mM [U-100% 13C; U-100% 15N] MDA5, 20mM Bis-Tris-2, 250mM sodium chloride-3, 10mM DTT-4, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided
|
|
3B6E
Crystal structure of human DECH-box RNA Helicase MDA5 (Melanoma differentiation-associated protein 5), DECH-domain
Deposited 2007-10-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
277–490(214 aa)
Fragment:DECH domain: Residues 277-490
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8;298 K;1.2M Sodium citrate, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.60 Å
R-free 0.204
|
|
3GA3
Crystal structure of the C-terminal domain of human MDA5
Deposited 2009-02-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
893–1017(125 aa)
Fragment:C-terminal domain, residues 893-1017
|
Not recorded
|
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
EVAPORATION;pH 8.5;277 K;0.1 M Tris, 14 to 18% ethanol, pH 8.5, EVAPORATION, temperature 277K
|
Resolution 1.45 Å
R-free 0.204
|
|
4GL2
Structural Basis for dsRNA duplex backbone recognition by MDA5
Deposited 2012-08-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
306–1017(712 aa)
|
Not recorded
|
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.56 Å
R-free 0.320
|
|
4GL2
Structural Basis for dsRNA duplex backbone recognition by MDA5
Deposited 2012-08-13
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–RNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain B
306–1017(712 aa)
|
Not recorded
|
ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1
ZN ZINC ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.56 Å
R-free 0.320
|
|
7DNI
MDA5 CARDs-MAVS CARD polyUb complex
Deposited 2020-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: hexadecameric
|
Chain A
1–208(208 aa)
Chain B
1–208(208 aa)
Chain C
1–208(208 aa)
Chain D
1–208(208 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
|
Resolution 3.20 Å
|
|
7DNJ
K63-polyUb MDA5CARDs complex
Deposited 2020-12-09
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain A
1–208(208 aa)
Chain B
1–208(208 aa)
Chain C
1–208(208 aa)
Chain D
1–208(208 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen OTHER
|
Resolution 3.30 Å
|
|
7JL0
Cryo-EM structure of MDA5-dsRNA in complex with TRIM65 PSpry domain (Monomer)
Deposited 2020-07-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain A
287–1025(739 aa)
Fragment:UNP residues 287-1025
|
Not recorded
|
ZN ZINC ION × 1
ADP ADENOSINE-5'-DIPHOSPHATE × 1
ALF TETRAFLUOROALUMINATE ION × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.30 Å
|
|
7JL2
Cryo-EM structure of MDA5-dsRNA filament in complex with TRIM65 PSpry domain (Trimer)
Deposited 2020-07-29
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Protein–RNA
Heteromer;Protein × 6
PDB declaration: octameric
|
Chain A
287–1025(739 aa)
Fragment:UNP residues 287-1025
Chain C
287–1025(739 aa)
Fragment:UNP residues 287-1025
Chain E
287–1025(739 aa)
Fragment:UNP residues 287-1025
|
Not recorded
|
ZN ZINC ION × 3
ADP ADENOSINE-5'-DIPHOSPHATE × 3
ALF TETRAFLUOROALUMINATE ION × 3
MG MAGNESIUM ION × 3
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.30 Å
|