9lzk

The PSI1-IsiA13 complex with double-layered IsiA proteins bound to the monomeric PSI core

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Iron stress-induced chlorophyll-binding protein

OrganismNot specified

UniProt Q8DK20

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ISIA_THEVB
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–358; UniProt 1–358 Author chain 2; PDBConstruct 1–358; UniProt 1–358 Author chain 3; PDBConstruct 1–358; UniProt 1–358 Author chain 4; PDBConstruct 1–358; UniProt 1–358 Author chain 5; PDBConstruct 1–358; UniProt 1–358 Author chain 6; PDBConstruct 1–358; UniProt 1–358 Author chain a; PDBConstruct 1–358; UniProt 1–358 Author chain b; PDBConstruct 1–358; UniProt 1–358 Author chain c; PDBConstruct 1–358; UniProt 1–358 Author chain d; PDBConstruct 1–358; UniProt 1–358 Author chain e; PDBConstruct 1–358; UniProt 1–358 Author chain f; PDBConstruct 1–358; UniProt 1–358 Author chain g; PDBConstruct 1–358; UniProt 1–358

Photosystem I P700 chlorophyll a apoprotein A1

OrganismNot specified

UniProt P0A405

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAA_THEVB
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 1–755; UniProt 1–755

Photosystem I P700 chlorophyll a apoprotein A2

OrganismNot specified

UniProt P0A407

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAB_THEVB
Isoform —
PDB entities 3
Chains and sequence ranges Author chain B; PDBConstruct 1–741; UniProt 1–741

Photosystem I iron-sulfur center

OrganismNot specified

UniProt P0A415

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAC_THEVB
Isoform —
PDB entities 4
Chains and sequence ranges Author chain C; PDBConstruct 1–81; UniProt 1–81

Photosystem I reaction center subunit II

OrganismNot specified

UniProt P0A420

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAD_THEVB
Isoform —
PDB entities 5
Chains and sequence ranges Author chain D; PDBConstruct 1–139; UniProt 1–139

Photosystem I reaction center subunit IV

OrganismNot specified

UniProt P0A423

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAE_THEVB
Isoform —
PDB entities 6
Chains and sequence ranges Author chain E; PDBConstruct 1–76; UniProt 1–76

Photosystem I reaction center subunit III

OrganismNot specified

UniProt P0A401

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAF_THEVB
Isoform —
PDB entities 7
Chains and sequence ranges Author chain F; PDBConstruct 1–164; UniProt 1–164

Photosystem I reaction center subunit VIII

OrganismNot specified

UniProt P0A427

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAI_THEVB
Isoform —
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–38; UniProt 1–38

Photosystem I reaction center subunit IX

OrganismNot specified

UniProt P0A429

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAJ_THEVB
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–41; UniProt 1–41

Photosystem I reaction center subunit PsaK

OrganismNot specified

UniProt P0A425

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAK_THEVB
Isoform —
PDB entities 10
Chains and sequence ranges Author chain K; PDBConstruct 1–83; UniProt 1–83

Photosystem I reaction center subunit XII

OrganismNot specified

UniProt P0A403

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAM_THEVB
Isoform —
PDB entities 11
Chains and sequence ranges Author chain M; PDBConstruct 1–31; UniProt 1–31

Photosystem I 4.8K protein

OrganismNot specified

UniProt Q8DKP6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Iron stress-induced chlorophyll-binding protein × 13 (Q8DK20) Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) CHLOROPHYLL A × 313 BETA-CAROTENE × 73 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 14 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 6 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 PHYLLOQUINONE × 2 IRON/SULFUR CLUSTER × 3 DODECYL-ALPHA-D-MALTOSIDE × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8DKP6_THEVB
Isoform —
PDB entities 12
Chains and sequence ranges Author chain X; PDBConstruct 1–39; UniProt 1–39

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9lzk
Deposition date deposition_date2025-02-21
Structure title titleThe PSI1-IsiA13 complex with double-layered IsiA proteins bound to the monomeric PSI core
Keywords keywordsPhotosystem-antenna Complex, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9lzk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9lzk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9lzk__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)76.14 Å
Rg (electron density)76.17 Å
Total Rg76.17 Å
Atom count72827
Residues6539
Excluded volume1365200 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9lzk__assembly_1__model_1 24-meric (24) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (20)

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7. Citations (1)