Blimp-1 with compound 5

Method: X-RAY DIFFRACTION D_max: 139.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9q1g
deposition_date	2025-08-13
last_revision	2026-01-14
title	Blimp-1 with compound 5
keywords	transcription, factor, B-cell, lymphocyte; TRANSCRIPTION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	41.81 Å
rg_electron	41.66 Å
i0	601435000.00
molecular_weight	136100.0 kDa
excluded_volume	133060 Å³
envelope_volume	255450 Å³
shell_volume	53077 Å³
envelope_diameter	144.9 Å
shell_rg	44.89 Å
envelope_rg	41.00 Å
shape_rg	41.64 Å
total_rg	41.83 Å
total_atoms	10408
n_residues	1253
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	139.6 Å
rg_real	41.85 Å
rg_real_error	1.29 Å
i0_real	6.0140e+08
i0_real_error	1.1110e+07
rg_reciprocal	41.82 Å
i0_reciprocal	601400000.0000
total_estimate	0.8760
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	51.4 Å
skewness	0.320
kurtosis	-0.302
angular_range	— – 0.1900 Å⁻¹
current_alpha	0.0000
highest_alpha	15650000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.696

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	243.416 Å
length_b	47.866 Å
length_c	180.655 Å
angle_alpha	90.00 °
angle_beta	129.18 °
angle_gamma	90.00 °
z_pdb	32

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	3.703 Å
resolution_low	38.090 Å
r_factor	0.2188
r_work	0.2163
r_free	0.2527

description	PR domain zinc finger protein 1
formula_weight	21865.5 kDa
ec_number	2.1.1.-
mutation	37-222
src_method	man
entity_count	8

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H
atom_count	10520

Blimp-1 with compound 5

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ;

description	(2S)-2-(4-bromophenyl)-2-(5,8-dihydropyrido[3,4-d]pyrimidin-7(6H)-yl)acetamide
formula_weight	347.2 kDa
src_method	syn
entity_count	8

fit	/app/data/saxs_computation/q1/9q1g/9q1g.fit
pddf	/app/data/pr_computation/q1/9q1g/9q1g.pr.out
profile	/app/data/saxs_computation/q1/9q1g/9q1g.dat