SAXSdb — 9q1g

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1. Protein Identity and Related Structures Protein Identity & Related Structures

PR domain zinc finger protein 1

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 8	(2S)-2-(4-bromophenyl)-2-(5,8-dihydropyrido[3,4-d]pyrimidin-7(6H)-yl)acetamide × 8	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	PRDM1_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 3–188； UniProt 38–223 Author chain B； PDBConstruct 3–188； UniProt 38–223 Author chain C； PDBConstruct 3–188； UniProt 38–223 Author chain D； PDBConstruct 3–188； UniProt 38–223 Author chain E； PDBConstruct 3–188； UniProt 38–223 Author chain F； PDBConstruct 3–188； UniProt 38–223 Author chain G； PDBConstruct 3–188； UniProt 38–223 Author chain H； PDBConstruct 3–188； UniProt 38–223

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9q1g
Deposition date deposition_date	2025-08-13
Last revision last_revision	2026-01-14
Structure title title	Blimp-1 with compound 5
Keywords keywords	transcription, factor, B-cell, lymphocyte; TRANSCRIPTION
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9q1g__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9q1g__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9q1g__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	41.83 Å
Rg (electron density)	41.67 Å
Total Rg	41.86 Å
Atom count	10408
Residues	1253
Excluded volume	180850 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9q1g__assembly_1__model_1`	octameric （8）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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Unit-cell length a length_a	243.416 Å
Unit-cell length b length_b	47.866 Å
Unit-cell length c length_c	180.655 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	129.18 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	32

Space group space_group	C 1 2 1
Space-group number int_tables_number	5
Crystal system crystal_system	—

Resolution resolution	3.703 Å
Low-resolution limit resolution_low	38.090 Å
R factor r_factor	0.2188
R_work r_work	0.2163
R_free r_free	0.2527

Description description	PR domain zinc finger protein 1
Molecular weight formula_weight	21865.5 kDa
EC 编号 ec_number	2.1.1.-
Mutation mutation	37-222
Source method src_method	man
Copy count entity_count	8

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H
Atom count atom_count	10520

Blimp-1 with compound 5

1. Protein Identity and Related Structures Protein Identity & Related Structures

PR domain zinc finger protein 1

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9q1g__assembly_1__model_1

9q1g__assembly_1__model_1 | I(q)

9q1g__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)

Source organism organism	Homo sapiens
Common name common_name	human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ;

Blimp-1 with compound 5

1. Protein Identity and Related Structures Protein Identity & Related Structures

PR domain zinc finger protein 1

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9q1g__assembly_1__model_1

9q1g__assembly_1__model_1 | I(q)

9q1g__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (2)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 non-polymer

7. Citations (1)