9qal
Solution NMR structure of Arkadia 2 RING domain
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qal |
| deposition_date | 2025-02-28 |
| last_revision | 2026-03-11 |
| title | Solution NMR structure of Arkadia 2 RING domain |
| keywords | Arkadia 2, Arkadia, RNF165, E3 Ub ligase, RING domain, E2 enzyme, TGF-b pathway, UbcH5b, LIGASE; LIGASE |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.95 Å |
| rg_electron | 12.85 Å |
| i0 | 1011140000.00 |
| molecular_weight | 243490.0 kDa |
| excluded_volume | 293870 ų |
| envelope_volume | 37702 ų |
| shell_volume | 17293 ų |
| envelope_diameter | 65.1 Å |
| shell_rg | 24.47 Å |
| envelope_rg | 19.31 Å |
| shape_rg | 12.88 Å |
| total_rg | 13.01 Å |
| total_atoms | 32550 |
| n_residues | 2108 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 34.0 Å |
| rg_real | 12.29 Å |
| rg_real_error | 0.05 Å |
| i0_real | 9.6890e+08 |
| i0_real_error | 7.3770e+06 |
| rg_reciprocal | 13.01 Å |
| i0_reciprocal | 1011000000.0000 |
| total_estimate | 0.6828 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 14.6 Å |
| skewness | 0.236 |
| kurtosis | -0.361 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 3.6680 |
| highest_alpha | 125500.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.002; Oscil: 0.978; Stabil: 0.983; Sysdev: 0.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000 |