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9qhw

ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs

Method: ELECTRON MICROSCOPY D_max: 100.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9qhw
deposition_date	2025-03-16
title	ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs
keywords	ABC transporter Type V ABC transporter Arabinogalactan precursor Lipid-linked galactan exporter, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.38 Å
rg_electron	30.58 Å
i0	201424000.00
molecular_weight	118990.0 kDa
excluded_volume	151490 Å³
envelope_volume	186840 Å³
shell_volume	49227 Å³
envelope_diameter	100.8 Å
shell_rg	39.24 Å
envelope_rg	30.45 Å
shape_rg	30.59 Å
total_rg	31.31 Å
total_atoms	16956
n_residues	1048
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	100.3 Å
rg_real	31.28 Å
rg_real_error	0.71 Å
i0_real	2.0140e+08
i0_real_error	3.1440e+06
rg_reciprocal	31.32 Å
i0_reciprocal	201400000.0000
total_estimate	0.8870
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	38.1 Å
skewness	0.299
kurtosis	-0.326
angular_range	— – 0.2500 Å⁻¹
current_alpha	0.0000
highest_alpha	58200000.0000
n_real_points	51
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.880; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.896

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	ABC transporter permease
formula_weight	35249.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	16956

MGSSHHHHHHSQMSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVVQLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 2 polymer

description	ABC transporter ATP-binding protein
formula_weight	28453.7 kDa
ec_number	3.6.3.40
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,D

MVSIQTHQAWVEFPIFDAKSRSLKKAFLGKAGGAIGRNESNVVVIEALRDITLSLKEGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSSYIKGRVAPVFDLGVGMDPEISGYENIIIRGMFLGQTRKQMQAKVDEIADFTELGEYLSMPLRTYSTGMRVRLAMGVVTSIDPEILLLDEGIGAVDAEFMKKARIRLQQLVERSGMLVFASHSNEFLARLCNTAMWIDHGTIKMSGGIEDVVRAYEGDEAGDHVAQILAEDA

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	2

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.30 Å
resolution_method	—
num_particles	90928

fit	/app/data/saxs_computation/qh/9qhw/9qhw.fit
pddf	/app/data/pr_computation/qh/9qhw/9qhw.pr.out
profile	/app/data/saxs_computation/qh/9qhw/9qhw.dat

ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in nanodiscs

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)