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9qhx

ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs

Method: ELECTRON MICROSCOPY D_max: 99.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9qhx
deposition_date	2025-03-16
title	ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs
keywords	ABC transporter Type V ABC transporter Arabinogalactan precursor Lipid-linked galactan exporter, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.19 Å
rg_electron	30.41 Å
i0	201609000.00
molecular_weight	118990.0 kDa
excluded_volume	151490 Å³
envelope_volume	185220 Å³
shell_volume	49061 Å³
envelope_diameter	99.6 Å
shell_rg	38.98 Å
envelope_rg	30.21 Å
shape_rg	30.42 Å
total_rg	31.13 Å
total_atoms	16958
n_residues	1048
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	99.1 Å
rg_real	31.08 Å
rg_real_error	0.56 Å
i0_real	2.0160e+08
i0_real_error	2.8020e+06
rg_reciprocal	31.13 Å
i0_reciprocal	201600000.0000
total_estimate	0.8201
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	36.9 Å
skewness	0.285
kurtosis	-0.338
angular_range	— – 0.2550 Å⁻¹
current_alpha	0.0000
highest_alpha	57080000.0000
n_real_points	52
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.886; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	ABC transporter permease
formula_weight	35249.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	16958

MGSSHHHHHHSQMSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVVQLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 2 polymer

description	ABC transporter ATP-binding protein
formula_weight	28452.7 kDa
ec_number	3.6.3.40
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,D

MVSIQTHQAWVEFPIFDAKSRSLKKAFLGKAGGAIGRNESNVVVIEALRDITLSLKEGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSSYIKGRVAPVFDLGVGMDPEISGYENIIIRGMFLGQTRKQMQAKVDEIADFTELGEYLSMPLRTYSTGMRVRLAMGVVTSIDPEILLLDQGIGAVDAEFMKKARIRLQQLVERSGMLVFASHSNEFLARLCNTAMWIDHGTIKMSGGIEDVVRAYEGDEAGDHVAQILAEDA

Source

organism	Mycobacteroides abscessus
ncbi_taxonomy_id	36809
host_organism	Escherichia coli

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	2

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.47 Å
resolution_method	—
num_particles	208854

fit	/app/data/saxs_computation/qh/9qhx/9qhx.fit
pddf	/app/data/pr_computation/qh/9qhx/9qhx.pr.out
profile	/app/data/saxs_computation/qh/9qhx/9qhx.dat

ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)