SAXSdb — 9qqr

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1. Structure Basics

entry_id	9qqr
deposition_date	2025-04-02
title	S.aureus ClpC decameric resting state
keywords	Chaperone, AAA+, Unfoldase; CHAPERONE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	76.38 Å
rg_electron	76.24 Å
i0	8234080000.00
molecular_weight	757230.0 kDa
excluded_volume	944330 Å³
envelope_volume	1727800 Å³
shell_volume	189150 Å³
envelope_diameter	275.4 Å
shell_rg	79.99 Å
envelope_rg	71.54 Å
shape_rg	76.26 Å
total_rg	76.22 Å
total_atoms	53192
n_residues	6723
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	263.2 Å
rg_real	79.64 Å
rg_real_error	1.45 Å
i0_real	8.2400e+09
i0_real_error	1.7720e+08
rg_reciprocal	76.23 Å
i0_reciprocal	8231000000.0000
total_estimate	0.8950
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	92.1 Å
skewness	0.450
kurtosis	-0.183
angular_range	— – 0.1000 Å⁻¹
current_alpha	1.2200
highest_alpha	574500000.0000
n_real_points	21
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.904; Stabil: 0.875; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.335

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	ATP-dependent Clp protease ATP-binding subunit ClpC
formula_weight	91170.4 kDa
src_method	man
entity_count	10

Polymer

type	polypeptide(L)
strand_id	F,G,H,I,J,E,D,C,B,A
atom_count	53192

MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGTLHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGNPEMSNKNAQASKSNNTPTLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTSLSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEFKYDIAEQTSETKTPSQA

Source

organism	Staphylococcus aureus
ncbi_taxonomy_id	1280
host_organism	Escherichia coli

Entity 2 non-polymer

description	ADENOSINE-5'-TRIPHOSPHATE
formula_weight	507.2 kDa
src_method	syn
entity_count	9

Entity 3 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	6

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.700 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	4.70 Å
resolution_method	—
num_particles	181306

fit	/app/data/saxs_computation/qq/9qqr/9qqr.fit
pddf	/app/data/pr_computation/qq/9qqr/9qqr.pr.out
profile	/app/data/saxs_computation/qq/9qqr/9qqr.dat

S.aureus ClpC decameric resting state

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D