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9r56

Wee1-like kinase in complex wirh MIPS-54861

Method: X-RAY DIFFRACTION D_max: 83.0 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9r56
deposition_date	2025-05-08
last_revision	2026-05-20
title	Wee1-like kinase in complex wirh MIPS-54861
keywords	COMPLEX, SGC, STRUCTURAL GENOMICS CONSORTIUM, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.97 Å
rg_electron	25.21 Å
i0	95883900.00
molecular_weight	51585.0 kDa
excluded_volume	50111 Å³
envelope_volume	84678 Å³
shell_volume	27850 Å³
envelope_diameter	90.0 Å
shell_rg	32.51 Å
envelope_rg	25.34 Å
shape_rg	25.14 Å
total_rg	25.93 Å
total_atoms	3986
n_residues	514
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.0 Å
rg_real	25.92 Å
rg_real_error	0.56 Å
i0_real	9.5880e+07
i0_real_error	1.3520e+06
rg_reciprocal	25.94 Å
i0_reciprocal	95890000.0000
total_estimate	0.9029
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	28.6 Å
skewness	0.252
kurtosis	-0.548
angular_range	— – 0.3050 Å⁻¹
current_alpha	0.0000
highest_alpha	21600000.0000
n_real_points	62
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.926; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.960

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	Wee1-like protein kinase
formula_weight	32353.8 kDa
ec_number	2.7.10.2
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	4001

GAMGKSRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSASRK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 non-polymer

description	1,2-ETHANEDIOL
formula_weight	62.1 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	MIPS-54861
formula_weight	554.6 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	15

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6. Citations (1)

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length_a	50.224 Å
length_b	69.029 Å
length_c	88.957 Å
angle_alpha	90.00 °
angle_beta	91.40 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	monoclinic

resolution	3.010 Å
resolution_low	54.530 Å
r_factor	0.2413
r_work	0.2357
r_free	0.2918

fit	/app/data/saxs_computation/r5/9r56/9r56.fit
pddf	/app/data/pr_computation/r5/9r56/9r56.pr.out
profile	/app/data/saxs_computation/r5/9r56/9r56.dat