SAXSdb — 9r9y

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

Pepper mottle virus

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 27	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	POLG_PEMVC
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain Aa； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ab； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ac； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ad； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ae； PDBConstruct 1–273； UniProt 2796–3068 Author chain Af； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ag； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ah； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ai； PDBConstruct 1–273； UniProt 2796–3068 Author chain Aj； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ak； PDBConstruct 1–273； UniProt 2796–3068 Author chain Al； PDBConstruct 1–273； UniProt 2796–3068 Author chain Am； PDBConstruct 1–273； UniProt 2796–3068 Author chain An； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ao； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ap； PDBConstruct 1–273； UniProt 2796–3068 Author chain Aq； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ar； PDBConstruct 1–273； UniProt 2796–3068 Author chain As； PDBConstruct 1–273； UniProt 2796–3068 Author chain At； PDBConstruct 1–273； UniProt 2796–3068 Author chain Au； PDBConstruct 1–273； UniProt 2796–3068 Author chain Av； PDBConstruct 1–273； UniProt 2796–3068 Author chain Aw； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ax； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ay； PDBConstruct 1–273； UniProt 2796–3068 Author chain Az； PDBConstruct 1–273； UniProt 2796–3068 Author chain Ba； PDBConstruct 1–273； UniProt 2796–3068

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9r9y
Deposition date deposition_date	2025-05-20
Structure title title	RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein
Keywords keywords	pepper mottle virus, virus-like particle, potyvirus, coat protein, helical, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9r9y__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9r9y__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9r9y__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	58.16 Å
Rg (electron density)	57.57 Å
Total Rg	57.91 Å
Atom count	40527
Residues	4995
Excluded volume	722070 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9r9y__assembly_1__model_1`	27-meric （27）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	4.32 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	2683

Description description	Capsid protein
Molecular weight formula_weight	30838.9 kDa
Source method src_method	man
Copy count entity_count	27

Polymer type type	polypeptide(L)
Chain IDs strand_id	Aa,Ab,Ac,Ad,Ae,Af,Ag,Ah,Ai,Aj,Ak,Al,Am,An,Ao,Ap,Aq,Ar,As,At,Au,Av,Aw,Ax,Ay,Az,Ba
Atom count atom_count	40527

RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9r9y__assembly_1__model_1

9r9y__assembly_1__model_1 | I(q)

9r9y__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Pepper mottle virus
NCBI taxonomy ID ncbi_taxonomy_id	12209
Host organism host_organism	Escherichia coli BL21(DE3)

RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9r9y__assembly_1__model_1

9r9y__assembly_1__model_1 | I(q)

9r9y__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)