9r9y
RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9r9y |
| deposition_date | 2025-05-20 |
| title | RNA-free stacked-ring (r9) virus-like particle composed of PepMoV coat protein |
| keywords | pepper mottle virus, virus-like particle, potyvirus, coat protein, helical, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 58.16 Å |
| rg_electron | 57.57 Å |
| i0 | 4839620000.00 |
| molecular_weight | 579420.0 kDa |
| excluded_volume | 722070 ų |
| envelope_volume | 1130900 ų |
| shell_volume | 154600 ų |
| envelope_diameter | 181.5 Å |
| shell_rg | 69.95 Å |
| envelope_rg | 54.31 Å |
| shape_rg | 57.54 Å |
| total_rg | 57.91 Å |
| total_atoms | 40527 |
| n_residues | 4995 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 171.4 Å |
| rg_real | 57.60 Å |
| rg_real_error | 0.98 Å |
| i0_real | 4.8400e+09 |
| i0_real_error | 8.7780e+07 |
| rg_reciprocal | 58.62 Å |
| i0_reciprocal | 4847000000.0000 |
| total_estimate | 0.8579 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 88.9 Å |
| skewness | -0.214 |
| kurtosis | -0.620 |
| angular_range | — – 0.1350 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1732000000.0000 |
| n_real_points | 28 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.787; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.941; Smooth: 0.845 |