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9r9x

ssRNA-containing helical virus-like particle composed of PepMoV coat protein

Method: ELECTRON MICROSCOPY D_max: 202.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9r9x
deposition_date	2025-05-20
title	ssRNA-containing helical virus-like particle composed of PepMoV coat protein
keywords	pepper mottle virus, virus-like particle, potyvirus, coat protein, helical, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	63.44 Å
rg_electron	63.62 Å
i0	15295500000.00
molecular_weight	982810.0 kDa
excluded_volume	1202100 Å³
envelope_volume	1700100 Å³
shell_volume	205610 Å³
envelope_diameter	256.4 Å
shell_rg	75.44 Å
envelope_rg	64.09 Å
shape_rg	63.62 Å
total_rg	63.77 Å
total_atoms	68508
n_residues	8280
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	202.8 Å
rg_real	63.08 Å
rg_real_error	0.89 Å
i0_real	1.5270e+10
i0_real_error	2.7540e+08
rg_reciprocal	63.61 Å
i0_reciprocal	15310000000.0000
total_estimate	0.8478
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	81.1 Å
skewness	0.334
kurtosis	-0.053
angular_range	— – 0.1250 Å⁻¹
current_alpha	0.0216
highest_alpha	3295000000.0000
n_real_points	26
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.816; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.942; Smooth: 0.623

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	Capsid protein
formula_weight	30838.9 kDa
src_method	man
entity_count	36

Polymer

type	polypeptide(L)
strand_id	Aa,Ac,Ae,Ag,Ai,Ak,Am,Ao,Aq,As,Au,Aw,Ay,Ba,Bc,Be,Bg,Bi,Bk,Bm,Bo,Bq,Bs,Bu,Bw,By,Ca,Cc,Ce,Cg,Ci,Ck,Cm,Co,Cq,Cs
atom_count	68508

SSSRSDTLDAGEEKKKNKEVATVSDGMGKKEVESTRDSDVNAGTVGTFTIPRIKSITEKMRMPKQKRKGVLNLAHLLEYKPSQVDISNTRSTQAQFDNWYCEVMKAYDLQEEAMGTVMNGLMVWCIENGTSPNISGTWTMMDGDEQVEFPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKQEPYMPRYGLVRNLRDMGLARYAFDFYEVTSRTSTRAREAHIQMKAAALKSAQTRLFGLDGGIGTQGENTERHTTEDVSPDMHTLLGVREM

Source

organism	Pepper mottle virus
ncbi_taxonomy_id	12209
host_organism	Escherichia coli BL21(DE3)

Entity 2 polymer

description	;RNA (5'-R(PUPUPUPUP*U)-3') ;
formula_weight	1485.9 kDa
src_method	man
entity_count	36

Polymer

type	polyribonucleotide
strand_id	Ab,Ad,Af,Ah,Aj,Al,An,Ap,Ar,At,Av,Ax,Az,Bb,Bd,Bf,Bh,Bj,Bl,Bn,Bp,Br,Bt,Bv,Bx,Bz,Cb,Cd,Cf,Ch,Cj,Cl,Cn,Cp,Cr,Ct

UUUUU

Source

organism	Pepper mottle virus
ncbi_taxonomy_id	12209
host_organism	Escherichia coli BL21

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.64 Å
resolution_method	—
num_particles	36808

fit	/app/data/saxs_computation/r9/9r9x/9r9x.fit
pddf	/app/data/pr_computation/r9/9r9x/9r9x.pr.out
profile	/app/data/saxs_computation/r9/9r9x/9r9x.dat

ssRNA-containing helical virus-like particle composed of PepMoV coat protein

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)